Pulse adds COVID-19 Simulation Support
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PulseGastrointestinalSystem Class Referenceabstract

#include <PulsePhysiologySystems.h>

Inherits SEGastrointestinalSystem, and PulseSystem.

Inherited by Gastrointestinal.

Public Member Functions

 PulseGastrointestinalSystem (Logger *logger)
 
virtual ~PulseGastrointestinalSystem ()=default
 
virtual const SEScalarGetScalar (const std::string &name) override
 
virtual void ComputeExposedModelParameters ()=0
 
- Public Member Functions inherited from SEGastrointestinalSystem
 SEGastrointestinalSystem (Logger *logger)
 
virtual ~SEGastrointestinalSystem ()
 
virtual void Clear ()
 
virtual bool HasWaterAbsorptionRate () const
 
virtual SEScalarVolumePerTimeGetWaterAbsorptionRate ()
 
virtual double GetWaterAbsorptionRate (const VolumePerTimeUnit &unit) const
 
virtual bool HasStomachContents () const
 
virtual SENutritionGetStomachContents ()
 
virtual const SENutritionGetStomachContents () const
 
virtual void RemoveStomachContents ()
 
- Public Member Functions inherited from SESystem
 SESystem (Logger *logger)
 
virtual ~SESystem ()
 
- Public Member Functions inherited from Loggable
 Loggable (Logger *logger=nullptr)
 
 Loggable (std::string const &logfile)
 
virtual ~Loggable ()
 
virtual LoggerGetLogger () const
 
virtual void SetLogger (Logger &logger)
 
virtual void Debug (std::string const &msg, std::string const &origin=empty) const
 
virtual void Debug (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Debug (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Info (std::string const &msg, std::string const &origin=empty) const
 
virtual void Info (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Info (const std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Info (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Warning (std::string const &msg, std::string const &origin=empty) const
 
virtual void Warning (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Warning (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Error (std::string const &msg, std::string const &origin=empty) const
 
virtual void Error (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Error (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Fatal (std::string const &msg, std::string const &origin=empty) const
 
virtual void Fatal (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Fatal (std::ostream &msg, std::string const &origin=empty) const
 
std::string to_string (int i)
 
std::string to_string (unsigned int i)
 
std::string to_string (size_t t)
 
std::string to_string (float f)
 
std::string to_string (double d)
 

Additional Inherited Members

- Static Public Member Functions inherited from SESystem
static const SEScalarGetScalar (const std::string &name, std::vector< SESystem *> *systems)
 
- Static Public Attributes inherited from Loggable
static const std::string empty
 
- Protected Member Functions inherited from PulseSystem
virtual void Initialize ()
 
  • Default system values to their homeostatic values
More...
 
virtual void SetUp ()=0
 
virtual void AtSteadyState ()=0
 Notify systems that steady state has been achieved. More...
 
virtual void PreProcess ()=0
 
virtual void Process (bool solve_and_transport=true)=0
 
virtual void PostProcess (bool solve_and_transport=true)=0
 
- Protected Attributes inherited from SEGastrointestinalSystem
SEScalarVolumePerTimem_WaterAbsorptionRate
 
SENutritionm_StomachContents
 
- Protected Attributes inherited from SESystem
std::stringstream m_ss
 
- Protected Attributes inherited from Loggable
bool myLogger
 
Loggerm_Logger
 

Constructor & Destructor Documentation

◆ PulseGastrointestinalSystem()

PulseGastrointestinalSystem::PulseGastrointestinalSystem ( Logger logger)
inline

◆ ~PulseGastrointestinalSystem()

virtual PulseGastrointestinalSystem::~PulseGastrointestinalSystem ( )
virtualdefault

Member Function Documentation

◆ ComputeExposedModelParameters()

virtual void PulseGastrointestinalSystem::ComputeExposedModelParameters ( )
pure virtual

Implemented in Gastrointestinal.

◆ GetScalar()

virtual const SEScalar* PulseGastrointestinalSystem::GetScalar ( const std::string &  name)
inlineoverridevirtual

Reimplemented from SEGastrointestinalSystem.

Distributed under the Apache License, Version 2.0.

See accompanying NOTICE file for details.