PhysiologyEngineThunk Class Reference

#include <PhysiologyEngineThunk.h>

Inherits LoggerForward.

Inherited by PulseEngineThunk.

Public Member Functions
	PhysiologyEngineThunk (const std::string &dataDir="./")
virtual	~PhysiologyEngineThunk ()
virtual void	Clear ()
virtual bool	IsValidPatient (std::string const &patient, eSerializationFormat format)=0
bool	SerializeFromFile (std::string const &filename, std::string const &data_requests, eSerializationFormat data_requests_format)
bool	SerializeToFile (std::string const &filename)
bool	SerializeFromString (std::string const &state, std::string const &data_requests, eSerializationFormat format)
std::string	SerializeToString (eSerializationFormat format)
bool	InitializeEngine (std::string const &patient_configuration, std::string const &data_requests, eSerializationFormat format)
std::string	GetInitialPatient (eSerializationFormat format)
std::string	GetConditions (eSerializationFormat format)
void	LogToConsole (bool b)
void	KeepLogMessages (bool keep)
void	SetLogFilename (std::string const &logfile)
std::string	PullLogMessages (eSerializationFormat format)
void	SetLoggerForward (LoggerForward *lf)
std::string	PullEventChanges (eSerializationFormat format)
std::string	PullActiveEvents (eSerializationFormat format)
std::string	GetPatientAssessment (int type, eSerializationFormat format)
bool	ProcessActions (std::string const &actions, eSerializationFormat format)
std::string	PullActiveActions (eSerializationFormat format)
bool	AdvanceTimeStep ()
double	GetTimeStep (std::string const &unit)
size_t	DataLength () const
double *	PullDataPtr ()
void	PullData (std::vector< double > &data)
void	ForwardDebug (const std::string &msg) override
void	ForwardInfo (const std::string &msg) override
void	ForwardWarning (const std::string &msg) override
void	ForwardError (const std::string &msg) override
void	ForwardFatal (const std::string &msg) override
Public Member Functions inherited from LoggerForward
virtual	~LoggerForward ()=default
virtual void	ForwardDebug (std::string const &)
virtual void	ForwardInfo (std::string const &)
virtual void	ForwardWarning (std::string const &)
virtual void	ForwardError (std::string const &)
virtual void	ForwardFatal (std::string const &)

Protected Member Functions
virtual void	AllocateEngine ()=0
virtual void	SetupDefaultDataRequests (SEDataRequestManager &drMgr)

Protected Attributes
std::unique_ptr< PhysiologyEngine >	m_Engine
SESubstanceManager *	m_SubMgr = nullptr
std::string	m_DataDir ="./"
std::vector< SEEventChange >	m_EventChanges
std::vector< SEEventChange >	m_ActiveEvents
bool	m_KeepLogMsgs = false
LoggerForward *	m_ForwardLogs =nullptr
LogMessages	m_LogMsgs
size_t	m_RequestedDataLength =0
double *	m_RequestedData = nullptr
std::vector< double >	m_RequestedValues

Detailed Description

An instance of an engine where the interface is define in stl and base data types. This interface is a thunk layer using serialized cdm objects to drive a Pulse engine.

Constructor & Destructor Documentation

PhysiologyEngineThunk()

PhysiologyEngineThunk::PhysiologyEngineThunk

(

const std::string &

dataDir = "./"

)

~PhysiologyEngineThunk()

PhysiologyEngineThunk::~PhysiologyEngineThunk ( )

virtual

Member Function Documentation

AdvanceTimeStep()

bool PhysiologyEngineThunk::AdvanceTimeStep

(

)

AllocateEngine()

virtual void PhysiologyEngineThunk::AllocateEngine ( )

protectedpure virtual

Implemented in PulseEngineThunk.

Clear()

void PhysiologyEngineThunk::Clear ( )

virtual

DataLength()

size_t PhysiologyEngineThunk::DataLength

(

)

const

ForwardDebug()

void PhysiologyEngineThunk::ForwardDebug ( const std::string &  msg )

overridevirtual

Reimplemented from LoggerForward.

ForwardError()

void PhysiologyEngineThunk::ForwardError ( const std::string &  msg )

overridevirtual

Reimplemented from LoggerForward.

ForwardFatal()

void PhysiologyEngineThunk::ForwardFatal ( const std::string &  msg )

overridevirtual

Reimplemented from LoggerForward.

ForwardInfo()

void PhysiologyEngineThunk::ForwardInfo ( const std::string &  msg )

overridevirtual

Reimplemented from LoggerForward.

ForwardWarning()

void PhysiologyEngineThunk::ForwardWarning ( const std::string &  msg )

overridevirtual

Reimplemented from LoggerForward.

GetConditions()

std::string PhysiologyEngineThunk::GetConditions

(

eSerializationFormat

format

)

GetInitialPatient()

std::string PhysiologyEngineThunk::GetInitialPatient

(

eSerializationFormat

format

)

GetPatientAssessment()

std::string PhysiologyEngineThunk::GetPatientAssessment	(	int	type,
		eSerializationFormat	format
	)

GetTimeStep()

double PhysiologyEngineThunk::GetTimeStep

(

std::string const &

unit

)

InitializeEngine()

bool PhysiologyEngineThunk::InitializeEngine	(	std::string const &	patient_configuration,
		std::string const &	data_requests,
		eSerializationFormat	format
	)

IsValidPatient()

virtual bool PhysiologyEngineThunk::IsValidPatient ( std::string const &  patient, eSerializationFormat  format  )

pure virtual

Implemented in PulseEngineThunk.

KeepLogMessages()

void PhysiologyEngineThunk::KeepLogMessages

(

bool

keep

)

LogToConsole()

void PhysiologyEngineThunk::LogToConsole

(

bool

b

)

ProcessActions()

bool PhysiologyEngineThunk::ProcessActions	(	std::string const &	actions,
		eSerializationFormat	format
	)

PullActiveActions()

std::string PhysiologyEngineThunk::PullActiveActions

(

eSerializationFormat

format

)

PullActiveEvents()

std::string PhysiologyEngineThunk::PullActiveEvents

(

eSerializationFormat

format

)

PullData()

void PhysiologyEngineThunk::PullData

(

std::vector< double > &

data

)

PullDataPtr()

double * PhysiologyEngineThunk::PullDataPtr

(

)

PullEventChanges()

std::string PhysiologyEngineThunk::PullEventChanges

(

eSerializationFormat

format

)

PullLogMessages()

std::string PhysiologyEngineThunk::PullLogMessages

(

eSerializationFormat

format

)

SerializeFromFile()

bool PhysiologyEngineThunk::SerializeFromFile	(	std::string const &	filename,
		std::string const &	data_requests,
		eSerializationFormat	data_requests_format
	)

SerializeFromString()

bool PhysiologyEngineThunk::SerializeFromString	(	std::string const &	state,
		std::string const &	data_requests,
		eSerializationFormat	format
	)

SerializeToFile()

bool PhysiologyEngineThunk::SerializeToFile

(

std::string const &

filename

)

SerializeToString()

std::string PhysiologyEngineThunk::SerializeToString

(

eSerializationFormat

format

)

SetLogFilename()

void PhysiologyEngineThunk::SetLogFilename

(

std::string const &

logfile

)

SetLoggerForward()

void PhysiologyEngineThunk::SetLoggerForward ( LoggerForward *  lf )

inline

SetupDefaultDataRequests()

void PhysiologyEngineThunk::SetupDefaultDataRequests ( SEDataRequestManager &  drMgr )

protectedvirtual

Member Data Documentation

m_ActiveEvents

std::vector<SEEventChange> PhysiologyEngineThunk::m_ActiveEvents

protected

m_DataDir

std::string PhysiologyEngineThunk::m_DataDir ="./"

protected

m_Engine

std::unique_ptr<PhysiologyEngine> PhysiologyEngineThunk::m_Engine

protected

m_EventChanges

std::vector<SEEventChange> PhysiologyEngineThunk::m_EventChanges

protected

m_ForwardLogs

LoggerForward* PhysiologyEngineThunk::m_ForwardLogs =nullptr

protected

m_KeepLogMsgs

bool PhysiologyEngineThunk::m_KeepLogMsgs = false

protected

m_LogMsgs

LogMessages PhysiologyEngineThunk::m_LogMsgs

protected

m_RequestedData

double* PhysiologyEngineThunk::m_RequestedData = nullptr

protected

m_RequestedDataLength

size_t PhysiologyEngineThunk::m_RequestedDataLength =0

protected

m_RequestedValues

std::vector<double> PhysiologyEngineThunk::m_RequestedValues

protected

m_SubMgr

SESubstanceManager* PhysiologyEngineThunk::m_SubMgr = nullptr

protected