| AddGasCompartmentSubstance(SESubstance &sub) | SECompartmentManager | virtual |
| AddLiquidCompartmentSubstance(SESubstance &sub) | SECompartmentManager | virtual |
| AddSubstance(SESubstance &s, CompartmentType &cmpt) const | SECompartmentManager | protected |
| AllowGasSubstance(SESubstance &, SEGasCompartment &) const | SECompartmentManager | inlineprotectedvirtual |
| AllowLiquidSubstance(SESubstance &, SELiquidCompartment &) const | SECompartmentManager | inlineprotectedvirtual |
| Clear() | SECompartmentManager | virtual |
| CreateCompartment(const std::string &name, std::map< std::string, CompartmentType * > &name2cmpt, std::vector< SESubstance * > *substances) | SECompartmentManager | protected |
| CreateGasCompartment(const std::string &name) | SECompartmentManager | virtual |
| CreateGasGraph(const std::string &name) | SECompartmentManager | virtual |
| CreateGasLink(SEGasCompartment &src, SEGasCompartment &tgt, const std::string &name) | SECompartmentManager | virtual |
| CreateLink(CompartmentType &src, CompartmentType &tgt, const std::string &name, std::map< std::string, LinkType * > &name2link) const | SECompartmentManager | protected |
| CreateLiquidCompartment(const std::string &name) | SECompartmentManager | virtual |
| CreateLiquidGraph(const std::string &name) | SECompartmentManager | virtual |
| CreateLiquidLink(SELiquidCompartment &src, SELiquidCompartment &tgt, const std::string &name) | SECompartmentManager | virtual |
| CreateThermalCompartment(const std::string &name) | SECompartmentManager | virtual |
| CreateThermalLink(SEThermalCompartment &src, SEThermalCompartment &tgt, const std::string &name) | SECompartmentManager | virtual |
| CreateTissueCompartment(const std::string &name) | SECompartmentManager | virtual |
| Debug(std::string const &msg) const | Loggable | virtual |
| Debug(std::stringstream &msg) const | Loggable | virtual |
| Debug(std::ostream &msg) const | Loggable | virtual |
| DeleteGasCompartment(const std::string &name) | SECompartmentManager | virtual |
| DeleteGasGraph(const std::string &name) | SECompartmentManager | virtual |
| DeleteGasLink(const std::string &name) | SECompartmentManager | virtual |
| DeleteLiquidCompartment(const std::string &name) | SECompartmentManager | virtual |
| DeleteLiquidGraph(const std::string &name) | SECompartmentManager | virtual |
| DeleteLiquidLink(const std::string &name) | SECompartmentManager | virtual |
| DeleteThermalCompartment(const std::string &name) | SECompartmentManager | virtual |
| DeleteThermalLink(const std::string &name) | SECompartmentManager | virtual |
| DeleteTissueCompartment(const std::string &name) | SECompartmentManager | virtual |
| Error(std::string const &msg) const | Loggable | virtual |
| Error(std::stringstream &msg) const | Loggable | virtual |
| Error(std::ostream &msg) const | Loggable | virtual |
| Fatal(std::string const &msg) const | Loggable | virtual |
| Fatal(std::stringstream &msg) const | Loggable | virtual |
| Fatal(std::ostream &msg) const | Loggable | virtual |
| FindLeaves(CompartmentType *cmpt, std::vector< CompartmentType * > &leaves) const | SECompartmentManager | protected |
| GetChildLinks(CompartmentType *pnt, CompartmentType *child) const | SECompartmentManager | protected |
| GetCompartment(eCompartment_Type type, const std::string &name) | SECompartmentManager | virtual |
| GetCompartment(eCompartment_Type type, const std::string &name) const | SECompartmentManager | virtual |
| GetCompartment(const std::string &name, std::map< std::string, CompartmentType * > &name2cmpt) const | SECompartmentManager | protected |
| GetCompartment(const std::string &name, const std::map< std::string, CompartmentType * > &name2cmpt) const | SECompartmentManager | protected |
| GetGasCompartment(const std::string &name) | SECompartmentManager | virtual |
| GetGasCompartment(const std::string &name) const | SECompartmentManager | virtual |
| GetGasCompartments() | SECompartmentManager | virtual |
| GetGasCompartmentSubstances() const | SECompartmentManager | virtual |
| GetGasGraph(const std::string &name) | SECompartmentManager | virtual |
| GetGasGraph(const std::string &name) const | SECompartmentManager | virtual |
| GetGasGraphs() | SECompartmentManager | virtual |
| GetGasLeafCompartments() | SECompartmentManager | virtual |
| GetGasLink(const std::string &name) | SECompartmentManager | virtual |
| GetGasLink(const std::string &name) const | SECompartmentManager | virtual |
| GetGasLinks() | SECompartmentManager | virtual |
| GetLink(const std::string &name, std::map< std::string, LinkType * > &name2link) const | SECompartmentManager | protected |
| GetLink(const std::string &name, const std::map< std::string, LinkType * > &name2link) const | SECompartmentManager | protected |
| GetLiquidCompartment(const std::string &name) | SECompartmentManager | virtual |
| GetLiquidCompartment(const std::string &name) const | SECompartmentManager | virtual |
| GetLiquidCompartments() | SECompartmentManager | virtual |
| GetLiquidCompartmentSubstances() const | SECompartmentManager | virtual |
| GetLiquidGraph(const std::string &name) | SECompartmentManager | virtual |
| GetLiquidGraph(const std::string &name) const | SECompartmentManager | virtual |
| GetLiquidGraphs() | SECompartmentManager | virtual |
| GetLiquidLeafCompartments() | SECompartmentManager | virtual |
| GetLiquidLink(const std::string &name) | SECompartmentManager | virtual |
| GetLiquidLink(const std::string &name) const | SECompartmentManager | virtual |
| GetLiquidLinks() | SECompartmentManager | virtual |
| GetLogger() const | Loggable | virtual |
| GetThermalCompartment(const std::string &name) | SECompartmentManager | virtual |
| GetThermalCompartment(const std::string &name) const | SECompartmentManager | virtual |
| GetThermalCompartments() | SECompartmentManager | virtual |
| GetThermalLeafCompartments() | SECompartmentManager | virtual |
| GetThermalLink(const std::string &name) | SECompartmentManager | virtual |
| GetThermalLink(const std::string &name) const | SECompartmentManager | virtual |
| GetThermalLinks() | SECompartmentManager | virtual |
| GetTissueCompartment(const std::string &name) | SECompartmentManager | virtual |
| GetTissueCompartment(const std::string &name) const | SECompartmentManager | virtual |
| GetTissueCompartments() | SECompartmentManager | virtual |
| GetTissueLeafCompartments() | SECompartmentManager | virtual |
| HasCompartment(eCompartment_Type type, const std::string &name) const | SECompartmentManager | virtual |
| HasCompartment(const std::string &name, const std::map< std::string, CompartmentType * > &name2cmpt) const | SECompartmentManager | protected |
| HasGasCompartment(const std::string &name) const | SECompartmentManager | virtual |
| HasGasGraph(const std::string &name) const | SECompartmentManager | virtual |
| HasGasLink(const std::string &name) const | SECompartmentManager | virtual |
| HasLink(const std::string &name, const std::map< std::string, LinkType * > &name2link) const | SECompartmentManager | protected |
| HasLiquidCompartment(const std::string &name) const | SECompartmentManager | virtual |
| HasLiquidGraph(const std::string &name) const | SECompartmentManager | virtual |
| HasLiquidLink(const std::string &name) const | SECompartmentManager | virtual |
| HasThermalCompartment(const std::string &name) const | SECompartmentManager | virtual |
| HasThermalLink(const std::string &name) const | SECompartmentManager | virtual |
| HasTissueCompartment(const std::string &name) const | SECompartmentManager | virtual |
| Info(std::string const &msg) const | Loggable | virtual |
| Info(std::stringstream &msg) const | Loggable | virtual |
| Info(const std::stringstream &msg) const | Loggable | virtual |
| Info(std::ostream &msg) const | Loggable | virtual |
| Loggable(Logger *logger=nullptr) | Loggable | |
| Loggable(std::string const &logfile) | Loggable | |
| m_CardiacCycleSampledCompartments | SECompartmentManager | protected |
| m_CO | SECompartmentManager | protected |
| m_CO2 | SECompartmentManager | protected |
| m_GasCompartments | SECompartmentManager | protected |
| m_GasGraphs | SECompartmentManager | protected |
| m_GasLeafCompartments | SECompartmentManager | protected |
| m_GasLinks | SECompartmentManager | protected |
| m_GasName2Compartments | SECompartmentManager | protected |
| m_GasName2Graphs | SECompartmentManager | protected |
| m_GasName2Links | SECompartmentManager | protected |
| m_GasSubstances | SECompartmentManager | protected |
| m_Hb | SECompartmentManager | protected |
| m_HbCO | SECompartmentManager | protected |
| m_HbCO2 | SECompartmentManager | protected |
| m_HbO2 | SECompartmentManager | protected |
| m_HbO2CO2 | SECompartmentManager | protected |
| m_LiquidCompartments | SECompartmentManager | protected |
| m_LiquidGraphs | SECompartmentManager | protected |
| m_LiquidLeafCompartments | SECompartmentManager | protected |
| m_LiquidLinks | SECompartmentManager | protected |
| m_LiquidName2Compartments | SECompartmentManager | protected |
| m_LiquidName2Graphs | SECompartmentManager | protected |
| m_LiquidName2Links | SECompartmentManager | protected |
| m_LiquidSubstances | SECompartmentManager | protected |
| m_Logger | Loggable | protected |
| m_O2 | SECompartmentManager | protected |
| m_subMgr | SECompartmentManager | protected |
| m_ThermalCompartments | SECompartmentManager | protected |
| m_ThermalLeafCompartments | SECompartmentManager | protected |
| m_ThermalLinks | SECompartmentManager | protected |
| m_ThermalName2Compartments | SECompartmentManager | protected |
| m_ThermalName2Links | SECompartmentManager | protected |
| m_TissueCompartments | SECompartmentManager | protected |
| m_TissueLeafCompartments | SECompartmentManager | protected |
| m_TissueName2Compartments | SECompartmentManager | protected |
| myLogger | Loggable | protected |
| PBCompartment | SECompartmentManager | friend |
| SampleByCardiacCyle(bool CycleStart) | SECompartmentManager | virtual |
| SampleByCardiacCyle(SELiquidCompartment &) | SECompartmentManager | virtual |
| SECompartmentManager(SESubstanceManager &subMgr) | SECompartmentManager | |
| SetLogger(Logger &logger) | Loggable | virtual |
| SetSubstances(CompartmentType &cmpt, std::vector< SESubstance * > &substances) const | SECompartmentManager | protected |
| Setup() | SECompartmentManager | virtual |
| StateChange() | SECompartmentManager | virtual |
| UpdateLinks() | SECompartmentManager | virtual |
| UpdateLinks(SEGasCompartmentGraph &graph) | SECompartmentManager | virtual |
| UpdateLinks(SELiquidCompartmentGraph &graph) | SECompartmentManager | virtual |
| UpdateLinks(const std::vector< CompartmentType * > &compartments, const std::vector< LinkType * > &links) const | SECompartmentManager | protected |
| Warning(std::string const &msg) const | Loggable | virtual |
| Warning(std::stringstream &msg) const | Loggable | virtual |
| Warning(std::ostream &msg) const | Loggable | virtual |
| ~Loggable() | Loggable | virtual |
| ~SECompartmentManager() | SECompartmentManager | virtual |
