SECompartmentManager Class Reference

#include <SECompartmentManager.h>

Inherits Loggable.

Public Member Functions
	SECompartmentManager (SESubstanceManager &subMgr)
virtual	~SECompartmentManager ()
virtual void	Setup ()
virtual void	Clear ()
virtual void	StateChange ()
virtual void	UpdateLinks ()
virtual void	UpdateLinks (SEGasCompartmentGraph &graph)
virtual void	UpdateLinks (SELiquidCompartmentGraph &graph)
virtual bool	HasCompartment (eCompartment_Type type, const std::string &name) const
virtual SECompartment *	GetCompartment (eCompartment_Type type, const std::string &name)
virtual const SECompartment *	GetCompartment (eCompartment_Type type, const std::string &name) const
virtual SEGasCompartment &	CreateGasCompartment (const std::string &name)
virtual void	DeleteGasCompartment (const std::string &name)
virtual bool	HasGasCompartment (const std::string &name) const
virtual SEGasCompartment *	GetGasCompartment (const std::string &name)
virtual const SEGasCompartment *	GetGasCompartment (const std::string &name) const
virtual const std::vector< SEGasCompartment * > &	GetGasCompartments ()
virtual const std::vector< SEGasCompartment * > &	GetGasLeafCompartments ()
virtual SEGasCompartmentLink &	CreateGasLink (SEGasCompartment &src, SEGasCompartment &tgt, const std::string &name)
virtual void	DeleteGasLink (const std::string &name)
virtual bool	HasGasLink (const std::string &name) const
virtual SEGasCompartmentLink *	GetGasLink (const std::string &name)
virtual const SEGasCompartmentLink *	GetGasLink (const std::string &name) const
virtual const std::vector< SEGasCompartmentLink * > &	GetGasLinks ()
virtual SEGasCompartmentGraph &	CreateGasGraph (const std::string &name)
virtual void	DeleteGasGraph (const std::string &name)
virtual bool	HasGasGraph (const std::string &name) const
virtual SEGasCompartmentGraph *	GetGasGraph (const std::string &name)
virtual const SEGasCompartmentGraph *	GetGasGraph (const std::string &name) const
virtual const std::vector< SEGasCompartmentGraph * > &	GetGasGraphs ()
virtual void	AddGasCompartmentSubstance (SESubstance &sub)
virtual const std::vector< SESubstance * > &	GetGasCompartmentSubstances () const
virtual SELiquidCompartment &	CreateLiquidCompartment (const std::string &name)
virtual void	DeleteLiquidCompartment (const std::string &name)
virtual bool	HasLiquidCompartment (const std::string &name) const
virtual SELiquidCompartment *	GetLiquidCompartment (const std::string &name)
virtual const SELiquidCompartment *	GetLiquidCompartment (const std::string &name) const
virtual const std::vector< SELiquidCompartment * > &	GetLiquidCompartments ()
virtual const std::vector< SELiquidCompartment * > &	GetLiquidLeafCompartments ()
virtual SELiquidCompartmentLink &	CreateLiquidLink (SELiquidCompartment &src, SELiquidCompartment &tgt, const std::string &name)
virtual void	DeleteLiquidLink (const std::string &name)
virtual bool	HasLiquidLink (const std::string &name) const
virtual SELiquidCompartmentLink *	GetLiquidLink (const std::string &name)
virtual const SELiquidCompartmentLink *	GetLiquidLink (const std::string &name) const
virtual const std::vector< SELiquidCompartmentLink * > &	GetLiquidLinks ()
virtual SELiquidCompartmentGraph &	CreateLiquidGraph (const std::string &name)
virtual void	DeleteLiquidGraph (const std::string &name)
virtual bool	HasLiquidGraph (const std::string &name) const
virtual SELiquidCompartmentGraph *	GetLiquidGraph (const std::string &name)
virtual const SELiquidCompartmentGraph *	GetLiquidGraph (const std::string &name) const
virtual const std::vector< SELiquidCompartmentGraph * > &	GetLiquidGraphs ()
virtual void	AddLiquidCompartmentSubstance (SESubstance &sub)
virtual const std::vector< SESubstance * > &	GetLiquidCompartmentSubstances () const
virtual void	SampleByCardiacCyle (bool CycleStart)
virtual void	SampleByCardiacCyle (SELiquidCompartment &)
virtual SEThermalCompartment &	CreateThermalCompartment (const std::string &name)
virtual void	DeleteThermalCompartment (const std::string &name)
virtual bool	HasThermalCompartment (const std::string &name) const
virtual SEThermalCompartment *	GetThermalCompartment (const std::string &name)
virtual const SEThermalCompartment *	GetThermalCompartment (const std::string &name) const
virtual const std::vector< SEThermalCompartment * > &	GetThermalCompartments ()
virtual const std::vector< SEThermalCompartment * > &	GetThermalLeafCompartments ()
virtual SEThermalCompartmentLink &	CreateThermalLink (SEThermalCompartment &src, SEThermalCompartment &tgt, const std::string &name)
virtual void	DeleteThermalLink (const std::string &name)
virtual bool	HasThermalLink (const std::string &name) const
virtual SEThermalCompartmentLink *	GetThermalLink (const std::string &name)
virtual const SEThermalCompartmentLink *	GetThermalLink (const std::string &name) const
virtual const std::vector< SEThermalCompartmentLink * > &	GetThermalLinks ()
virtual bool	HasTissueCompartment (const std::string &name) const
virtual void	DeleteTissueCompartment (const std::string &name)
virtual SETissueCompartment &	CreateTissueCompartment (const std::string &name)
virtual SETissueCompartment *	GetTissueCompartment (const std::string &name)
virtual const SETissueCompartment *	GetTissueCompartment (const std::string &name) const
virtual const std::vector< SETissueCompartment * > &	GetTissueCompartments ()
virtual const std::vector< SETissueCompartment * > &	GetTissueLeafCompartments ()
Public Member Functions inherited from Loggable
	Loggable (Logger *logger=nullptr)
	Loggable (std::string const &logfile)
virtual	~Loggable ()
virtual Logger *	GetLogger () const
virtual void	SetLogger (Logger &logger)
virtual void	Debug (std::string const &msg) const
virtual void	Debug (std::stringstream &msg) const
virtual void	Debug (std::ostream &msg) const
virtual void	Info (std::string const &msg) const
virtual void	Info (std::stringstream &msg) const
virtual void	Info (const std::stringstream &msg) const
virtual void	Info (std::ostream &msg) const
virtual void	Warning (std::string const &msg) const
virtual void	Warning (std::stringstream &msg) const
virtual void	Warning (std::ostream &msg) const
virtual void	Error (std::string const &msg) const
virtual void	Error (std::stringstream &msg) const
virtual void	Error (std::ostream &msg) const
virtual void	Fatal (std::string const &msg) const
virtual void	Fatal (std::stringstream &msg) const
virtual void	Fatal (std::ostream &msg) const

Protected Member Functions
template<typename CompartmentType , typename LinkType >
void	UpdateLinks (const std::vector< CompartmentType * > &compartments, const std::vector< LinkType * > &links) const
template<typename CompartmentType , typename LinkType >
void	GetChildLinks (CompartmentType *pnt, CompartmentType *child) const
template<typename CompartmentType >
void	FindLeaves (CompartmentType *cmpt, std::vector< CompartmentType * > &leaves) const
template<typename CompartmentType >
CompartmentType &	CreateCompartment (const std::string &name, std::map< std::string, CompartmentType * > &name2cmpt, std::vector< SESubstance * > *substances)
template<typename CompartmentType >
bool	HasCompartment (const std::string &name, const std::map< std::string, CompartmentType * > &name2cmpt) const
template<typename CompartmentType >
CompartmentType *	GetCompartment (const std::string &name, std::map< std::string, CompartmentType * > &name2cmpt) const
template<typename CompartmentType >
const CompartmentType *	GetCompartment (const std::string &name, const std::map< std::string, CompartmentType * > &name2cmpt) const
template<typename LinkType , typename CompartmentType >
LinkType &	CreateLink (CompartmentType &src, CompartmentType &tgt, const std::string &name, std::map< std::string, LinkType * > &name2link) const
template<typename LinkType >
bool	HasLink (const std::string &name, const std::map< std::string, LinkType * > &name2link) const
template<typename LinkType >
LinkType *	GetLink (const std::string &name, std::map< std::string, LinkType * > &name2link) const
template<typename LinkType >
const LinkType *	GetLink (const std::string &name, const std::map< std::string, LinkType * > &name2link) const
template<typename CompartmentType >
void	SetSubstances (CompartmentType &cmpt, std::vector< SESubstance * > &substances) const
template<typename CompartmentType >
void	AddSubstance (SESubstance &s, CompartmentType &cmpt) const
virtual bool	AllowGasSubstance (SESubstance &, SEGasCompartment &) const
virtual bool	AllowLiquidSubstance (SESubstance &, SELiquidCompartment &) const

Protected Attributes
std::vector< SEGasCompartment * >	m_GasCompartments
std::vector< SEGasCompartment * >	m_GasLeafCompartments
std::map< std::string, SEGasCompartment * >	m_GasName2Compartments
std::vector< SEGasCompartmentLink * >	m_GasLinks
std::map< std::string, SEGasCompartmentLink * >	m_GasName2Links
std::vector< SEGasCompartmentGraph * >	m_GasGraphs
std::map< std::string, SEGasCompartmentGraph * >	m_GasName2Graphs
std::vector< SESubstance * >	m_GasSubstances
std::vector< SELiquidCompartment * >	m_LiquidCompartments
std::vector< SELiquidCompartment * >	m_LiquidLeafCompartments
std::map< std::string, SELiquidCompartment * >	m_LiquidName2Compartments
std::vector< SELiquidCompartmentLink * >	m_LiquidLinks
std::map< std::string, SELiquidCompartmentLink * >	m_LiquidName2Links
std::vector< SELiquidCompartmentGraph * >	m_LiquidGraphs
std::map< std::string, SELiquidCompartmentGraph * >	m_LiquidName2Graphs
std::vector< SESubstance * >	m_LiquidSubstances
std::vector< SELiquidCompartment * >	m_CardiacCycleSampledCompartments
std::vector< SEThermalCompartment * >	m_ThermalCompartments
std::vector< SEThermalCompartment * >	m_ThermalLeafCompartments
std::map< std::string, SEThermalCompartment * >	m_ThermalName2Compartments
std::vector< SEThermalCompartmentLink * >	m_ThermalLinks
std::map< std::string, SEThermalCompartmentLink * >	m_ThermalName2Links
std::vector< SETissueCompartment * >	m_TissueCompartments
std::vector< SETissueCompartment * >	m_TissueLeafCompartments
std::map< std::string, SETissueCompartment * >	m_TissueName2Compartments
SESubstance *	m_O2
SESubstance *	m_CO2
SESubstance *	m_CO
SESubstance *	m_Hb
SESubstance *	m_HbO2
SESubstance *	m_HbCO2
SESubstance *	m_HbO2CO2
SESubstance *	m_HbCO
SESubstanceManager &	m_subMgr
Protected Attributes inherited from Loggable
bool	myLogger
Logger *	m_Logger

Friends
class	PBCompartment

Constructor & Destructor Documentation

SECompartmentManager()

SECompartmentManager::SECompartmentManager

(

SESubstanceManager &

subMgr

)

~SECompartmentManager()

SECompartmentManager::~SECompartmentManager ( )

virtual

Member Function Documentation

AddGasCompartmentSubstance()

void SECompartmentManager::AddGasCompartmentSubstance ( SESubstance &  sub )

virtual

AddLiquidCompartmentSubstance()

void SECompartmentManager::AddLiquidCompartmentSubstance ( SESubstance &  sub )

virtual

AddSubstance()

template<typename CompartmentType >

void SECompartmentManager::AddSubstance ( SESubstance &  s, CompartmentType &  cmpt  ) const

protected

AllowGasSubstance()

virtual bool SECompartmentManager::AllowGasSubstance ( SESubstance &  , SEGasCompartment &    ) const

inlineprotectedvirtual

AllowLiquidSubstance()

virtual bool SECompartmentManager::AllowLiquidSubstance ( SESubstance &  , SELiquidCompartment &    ) const

inlineprotectedvirtual

Clear()

void SECompartmentManager::Clear ( )

virtual

CreateCompartment()

template<typename CompartmentType >

CompartmentType & SECompartmentManager::CreateCompartment ( const std::string &  name, std::map< std::string, CompartmentType * > &  name2cmpt, std::vector< SESubstance * > *  substances  )

protected

CreateGasCompartment()

SEGasCompartment & SECompartmentManager::CreateGasCompartment ( const std::string &  name )

virtual

CreateGasGraph()

SEGasCompartmentGraph & SECompartmentManager::CreateGasGraph ( const std::string &  name )

virtual

CreateGasLink()

SEGasCompartmentLink & SECompartmentManager::CreateGasLink ( SEGasCompartment &  src, SEGasCompartment &  tgt, const std::string &  name  )

virtual

CreateLink()

template<typename LinkType , typename CompartmentType >

LinkType & SECompartmentManager::CreateLink ( CompartmentType &  src, CompartmentType &  tgt, const std::string &  name, std::map< std::string, LinkType * > &  name2link  ) const

protected

CreateLiquidCompartment()

SELiquidCompartment & SECompartmentManager::CreateLiquidCompartment ( const std::string &  name )

virtual

CreateLiquidGraph()

SELiquidCompartmentGraph & SECompartmentManager::CreateLiquidGraph ( const std::string &  name )

virtual

CreateLiquidLink()

SELiquidCompartmentLink & SECompartmentManager::CreateLiquidLink ( SELiquidCompartment &  src, SELiquidCompartment &  tgt, const std::string &  name  )

virtual

CreateThermalCompartment()

SEThermalCompartment & SECompartmentManager::CreateThermalCompartment ( const std::string &  name )

virtual

CreateThermalLink()

SEThermalCompartmentLink & SECompartmentManager::CreateThermalLink ( SEThermalCompartment &  src, SEThermalCompartment &  tgt, const std::string &  name  )

virtual

CreateTissueCompartment()

SETissueCompartment & SECompartmentManager::CreateTissueCompartment ( const std::string &  name )

virtual

DeleteGasCompartment()

void SECompartmentManager::DeleteGasCompartment ( const std::string &  name )

virtual

DeleteGasGraph()

void SECompartmentManager::DeleteGasGraph ( const std::string &  name )

virtual

DeleteGasLink()

void SECompartmentManager::DeleteGasLink ( const std::string &  name )

virtual

DeleteLiquidCompartment()

void SECompartmentManager::DeleteLiquidCompartment ( const std::string &  name )

virtual

DeleteLiquidGraph()

void SECompartmentManager::DeleteLiquidGraph ( const std::string &  name )

virtual

DeleteLiquidLink()

void SECompartmentManager::DeleteLiquidLink ( const std::string &  name )

virtual

DeleteThermalCompartment()

void SECompartmentManager::DeleteThermalCompartment ( const std::string &  name )

virtual

DeleteThermalLink()

void SECompartmentManager::DeleteThermalLink ( const std::string &  name )

virtual

DeleteTissueCompartment()

void SECompartmentManager::DeleteTissueCompartment ( const std::string &  name )

virtual

FindLeaves()

template<typename CompartmentType >

void SECompartmentManager::FindLeaves ( CompartmentType *  cmpt, std::vector< CompartmentType * > &  leaves  ) const

protected

GetChildLinks()

template<typename CompartmentType , typename LinkType >

void SECompartmentManager::GetChildLinks ( CompartmentType *  pnt, CompartmentType *  child  ) const

protected

GetCompartment() [1/4]

template<typename CompartmentType >

const CompartmentType * SECompartmentManager::GetCompartment ( const std::string &  name, const std::map< std::string, CompartmentType * > &  name2cmpt  ) const

protected

GetCompartment() [2/4]

template<typename CompartmentType >

CompartmentType * SECompartmentManager::GetCompartment ( const std::string &  name, std::map< std::string, CompartmentType * > &  name2cmpt  ) const

protected

GetCompartment() [3/4]

SECompartment * SECompartmentManager::GetCompartment ( eCompartment_Type  type, const std::string &  name  )

virtual

GetCompartment() [4/4]

const SECompartment * SECompartmentManager::GetCompartment ( eCompartment_Type  type, const std::string &  name  ) const

virtual

GetGasCompartment() [1/2]

SEGasCompartment * SECompartmentManager::GetGasCompartment ( const std::string &  name )

virtual

GetGasCompartment() [2/2]

const SEGasCompartment * SECompartmentManager::GetGasCompartment ( const std::string &  name ) const

virtual

GetGasCompartments()

const std::vector< SEGasCompartment * > & SECompartmentManager::GetGasCompartments ( )

virtual

GetGasCompartmentSubstances()

const std::vector< SESubstance * > & SECompartmentManager::GetGasCompartmentSubstances ( ) const

virtual

GetGasGraph() [1/2]

SEGasCompartmentGraph * SECompartmentManager::GetGasGraph ( const std::string &  name )

virtual

GetGasGraph() [2/2]

const SEGasCompartmentGraph * SECompartmentManager::GetGasGraph ( const std::string &  name ) const

virtual

GetGasGraphs()

const std::vector< SEGasCompartmentGraph * > & SECompartmentManager::GetGasGraphs ( )

virtual

GetGasLeafCompartments()

const std::vector< SEGasCompartment * > & SECompartmentManager::GetGasLeafCompartments ( )

virtual

GetGasLink() [1/2]

SEGasCompartmentLink * SECompartmentManager::GetGasLink ( const std::string &  name )

virtual

GetGasLink() [2/2]

const SEGasCompartmentLink * SECompartmentManager::GetGasLink ( const std::string &  name ) const

virtual

GetGasLinks()

const std::vector< SEGasCompartmentLink * > & SECompartmentManager::GetGasLinks ( )

virtual

GetLink() [1/2]

template<typename LinkType >

const LinkType * SECompartmentManager::GetLink ( const std::string &  name, const std::map< std::string, LinkType * > &  name2link  ) const

protected

GetLink() [2/2]

template<typename LinkType >

LinkType * SECompartmentManager::GetLink ( const std::string &  name, std::map< std::string, LinkType * > &  name2link  ) const

protected

GetLiquidCompartment() [1/2]

SELiquidCompartment * SECompartmentManager::GetLiquidCompartment ( const std::string &  name )

virtual

GetLiquidCompartment() [2/2]

const SELiquidCompartment * SECompartmentManager::GetLiquidCompartment ( const std::string &  name ) const

virtual

GetLiquidCompartments()

const std::vector< SELiquidCompartment * > & SECompartmentManager::GetLiquidCompartments ( )

virtual

GetLiquidCompartmentSubstances()

const std::vector< SESubstance * > & SECompartmentManager::GetLiquidCompartmentSubstances ( ) const

virtual

GetLiquidGraph() [1/2]

SELiquidCompartmentGraph * SECompartmentManager::GetLiquidGraph ( const std::string &  name )

virtual

GetLiquidGraph() [2/2]

const SELiquidCompartmentGraph * SECompartmentManager::GetLiquidGraph ( const std::string &  name ) const

virtual

GetLiquidGraphs()

const std::vector< SELiquidCompartmentGraph * > & SECompartmentManager::GetLiquidGraphs ( )

virtual

GetLiquidLeafCompartments()

const std::vector< SELiquidCompartment * > & SECompartmentManager::GetLiquidLeafCompartments ( )

virtual

GetLiquidLink() [1/2]

SELiquidCompartmentLink * SECompartmentManager::GetLiquidLink ( const std::string &  name )

virtual

GetLiquidLink() [2/2]

const SELiquidCompartmentLink * SECompartmentManager::GetLiquidLink ( const std::string &  name ) const

virtual

GetLiquidLinks()

const std::vector< SELiquidCompartmentLink * > & SECompartmentManager::GetLiquidLinks ( )

virtual

GetThermalCompartment() [1/2]

SEThermalCompartment * SECompartmentManager::GetThermalCompartment ( const std::string &  name )

virtual

GetThermalCompartment() [2/2]

const SEThermalCompartment * SECompartmentManager::GetThermalCompartment ( const std::string &  name ) const

virtual

GetThermalCompartments()

const std::vector< SEThermalCompartment * > & SECompartmentManager::GetThermalCompartments ( )

virtual

GetThermalLeafCompartments()

const std::vector< SEThermalCompartment * > & SECompartmentManager::GetThermalLeafCompartments ( )

virtual

GetThermalLink() [1/2]

SEThermalCompartmentLink * SECompartmentManager::GetThermalLink ( const std::string &  name )

virtual

GetThermalLink() [2/2]

const SEThermalCompartmentLink * SECompartmentManager::GetThermalLink ( const std::string &  name ) const

virtual

GetThermalLinks()

const std::vector< SEThermalCompartmentLink * > & SECompartmentManager::GetThermalLinks ( )

virtual

GetTissueCompartment() [1/2]

SETissueCompartment * SECompartmentManager::GetTissueCompartment ( const std::string &  name )

virtual

GetTissueCompartment() [2/2]

const SETissueCompartment * SECompartmentManager::GetTissueCompartment ( const std::string &  name ) const

virtual

GetTissueCompartments()

const std::vector< SETissueCompartment * > & SECompartmentManager::GetTissueCompartments ( )

virtual

GetTissueLeafCompartments()

const std::vector< SETissueCompartment * > & SECompartmentManager::GetTissueLeafCompartments ( )

virtual

HasCompartment() [1/2]

template<typename CompartmentType >

bool SECompartmentManager::HasCompartment ( const std::string &  name, const std::map< std::string, CompartmentType * > &  name2cmpt  ) const

protected

HasCompartment() [2/2]

bool SECompartmentManager::HasCompartment ( eCompartment_Type  type, const std::string &  name  ) const

virtual

HasGasCompartment()

bool SECompartmentManager::HasGasCompartment ( const std::string &  name ) const

virtual

HasGasGraph()

bool SECompartmentManager::HasGasGraph ( const std::string &  name ) const

virtual

HasGasLink()

bool SECompartmentManager::HasGasLink ( const std::string &  name ) const

virtual

HasLink()

template<typename LinkType >

bool SECompartmentManager::HasLink ( const std::string &  name, const std::map< std::string, LinkType * > &  name2link  ) const

protected

HasLiquidCompartment()

bool SECompartmentManager::HasLiquidCompartment ( const std::string &  name ) const

virtual

HasLiquidGraph()

bool SECompartmentManager::HasLiquidGraph ( const std::string &  name ) const

virtual

HasLiquidLink()

bool SECompartmentManager::HasLiquidLink ( const std::string &  name ) const

virtual

HasThermalCompartment()

bool SECompartmentManager::HasThermalCompartment ( const std::string &  name ) const

virtual

HasThermalLink()

bool SECompartmentManager::HasThermalLink ( const std::string &  name ) const

virtual

HasTissueCompartment()

bool SECompartmentManager::HasTissueCompartment ( const std::string &  name ) const

virtual

SampleByCardiacCyle() [1/2]

void SECompartmentManager::SampleByCardiacCyle ( bool  CycleStart )

virtual

SampleByCardiacCyle() [2/2]

void SECompartmentManager::SampleByCardiacCyle ( SELiquidCompartment &  cmpt )

virtual

SetSubstances()

template<typename CompartmentType >

void SECompartmentManager::SetSubstances ( CompartmentType &  cmpt, std::vector< SESubstance * > &  substances  ) const

protected

Setup()

void SECompartmentManager::Setup ( )

virtual

StateChange()

void SECompartmentManager::StateChange ( )

virtual

UpdateLinks() [1/4]

void SECompartmentManager::UpdateLinks ( )

virtual

UpdateLinks() [2/4]

template<typename CompartmentType , typename LinkType >

void SECompartmentManager::UpdateLinks ( const std::vector< CompartmentType * > &  compartments, const std::vector< LinkType * > &  links  ) const

protected

UpdateLinks() [3/4]

void SECompartmentManager::UpdateLinks ( SEGasCompartmentGraph &  graph )

virtual

UpdateLinks() [4/4]

void SECompartmentManager::UpdateLinks ( SELiquidCompartmentGraph &  graph )

virtual

Friends And Related Function Documentation

PBCompartment

friend class PBCompartment

friend

Member Data Documentation

m_CardiacCycleSampledCompartments

std::vector<SELiquidCompartment*> SECompartmentManager::m_CardiacCycleSampledCompartments

protected

m_CO

SESubstance* SECompartmentManager::m_CO

protected

m_CO2

SESubstance* SECompartmentManager::m_CO2

protected

m_GasCompartments

std::vector<SEGasCompartment*> SECompartmentManager::m_GasCompartments

protected

m_GasGraphs

std::vector<SEGasCompartmentGraph*> SECompartmentManager::m_GasGraphs

protected

m_GasLeafCompartments

std::vector<SEGasCompartment*> SECompartmentManager::m_GasLeafCompartments

protected

m_GasLinks

std::vector<SEGasCompartmentLink*> SECompartmentManager::m_GasLinks

protected

m_GasName2Compartments

std::map<std::string, SEGasCompartment*> SECompartmentManager::m_GasName2Compartments

protected

m_GasName2Graphs

std::map<std::string, SEGasCompartmentGraph*> SECompartmentManager::m_GasName2Graphs

protected

m_GasName2Links

std::map<std::string, SEGasCompartmentLink*> SECompartmentManager::m_GasName2Links

protected

m_GasSubstances

std::vector<SESubstance*> SECompartmentManager::m_GasSubstances

protected

m_Hb

SESubstance* SECompartmentManager::m_Hb

protected

m_HbCO

SESubstance* SECompartmentManager::m_HbCO

protected

m_HbCO2

SESubstance* SECompartmentManager::m_HbCO2

protected

m_HbO2

SESubstance* SECompartmentManager::m_HbO2

protected

m_HbO2CO2

SESubstance* SECompartmentManager::m_HbO2CO2

protected

m_LiquidCompartments

std::vector<SELiquidCompartment*> SECompartmentManager::m_LiquidCompartments

protected

m_LiquidGraphs

std::vector<SELiquidCompartmentGraph*> SECompartmentManager::m_LiquidGraphs

protected

m_LiquidLeafCompartments

std::vector<SELiquidCompartment*> SECompartmentManager::m_LiquidLeafCompartments

protected

m_LiquidLinks

std::vector<SELiquidCompartmentLink*> SECompartmentManager::m_LiquidLinks

protected

m_LiquidName2Compartments

std::map<std::string, SELiquidCompartment*> SECompartmentManager::m_LiquidName2Compartments

protected

m_LiquidName2Graphs

std::map<std::string, SELiquidCompartmentGraph*> SECompartmentManager::m_LiquidName2Graphs

protected

m_LiquidName2Links

std::map<std::string, SELiquidCompartmentLink*> SECompartmentManager::m_LiquidName2Links

protected

m_LiquidSubstances

std::vector<SESubstance*> SECompartmentManager::m_LiquidSubstances

protected

m_O2

SESubstance* SECompartmentManager::m_O2

protected

m_subMgr

SESubstanceManager& SECompartmentManager::m_subMgr

protected

m_ThermalCompartments

std::vector<SEThermalCompartment*> SECompartmentManager::m_ThermalCompartments

protected

m_ThermalLeafCompartments

std::vector<SEThermalCompartment*> SECompartmentManager::m_ThermalLeafCompartments

protected

m_ThermalLinks

std::vector<SEThermalCompartmentLink*> SECompartmentManager::m_ThermalLinks

protected

m_ThermalName2Compartments

std::map<std::string, SEThermalCompartment*> SECompartmentManager::m_ThermalName2Compartments

protected

m_ThermalName2Links

std::map<std::string, SEThermalCompartmentLink*> SECompartmentManager::m_ThermalName2Links

protected

m_TissueCompartments

std::vector<SETissueCompartment*> SECompartmentManager::m_TissueCompartments

protected

m_TissueLeafCompartments

std::vector<SETissueCompartment*> SECompartmentManager::m_TissueLeafCompartments

protected

m_TissueName2Compartments

std::map<std::string, SETissueCompartment*> SECompartmentManager::m_TissueName2Compartments

protected