#include <SEGasCompartmentGraph.h>

Inherits SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink >.

Public Member Functions
virtual	~SEGasCompartmentGraph ()

void	AddGraph (SEGasCompartmentGraph &graph)

Public Member Functions inherited from SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink >
	SECompartmentTransportGraph (const std::string &name, Logger *logger)

virtual	~SECompartmentTransportGraph ()

virtual void	Clear ()

virtual std::string	GetName () const

virtual void	StateChange ()

Public Member Functions inherited from SECompartmentGraph< COMPARTMENT_GRAPH_TYPES >
virtual	~SECompartmentGraph ()

virtual void	Clear ()

virtual std::string	GetName () const

virtual void	AddCompartment (CompartmentType &cmpt)

virtual void	ForceAddCompartment (CompartmentType &cmpt)

virtual CompartmentType *	GetCompartment (const std::string &name)

virtual const CompartmentType *	GetCompartment (const std::string &name) const

virtual const std::vector< CompartmentType * > &	GetCompartments () const

virtual void	RemoveCompartment (const CompartmentType &cmpt)

virtual void	RemoveCompartment (const std::string &name)

virtual void	AddLink (CompartmentLinkType &link)

virtual void	ForceAddLink (CompartmentLinkType &link)

virtual CompartmentLinkType *	GetLink (const std::string &name)

virtual const CompartmentLinkType *	GetLink (const std::string &name) const

virtual const std::vector< CompartmentLinkType * > &	GetLinks () const

virtual void	RemoveLink (const CompartmentLinkType &link)

virtual void	RemoveLink (const std::string &name)

Public Member Functions inherited from Loggable
	Loggable (Logger *logger=nullptr)

	Loggable (std::string const &logfile)

virtual	~Loggable ()

virtual Logger *	GetLogger () const

virtual void	SetLogger (Logger &logger)

virtual void	Debug (std::string const &msg) const

virtual void	Debug (std::stringstream &msg) const

virtual void	Debug (std::ostream &msg) const

virtual void	Info (std::string const &msg) const

virtual void	Info (std::stringstream &msg) const

virtual void	Info (const std::stringstream &msg) const

virtual void	Info (std::ostream &msg) const

virtual void	Warning (std::string const &msg) const

virtual void	Warning (std::stringstream &msg) const

virtual void	Warning (std::ostream &msg) const

virtual void	Error (std::string const &msg) const

virtual void	Error (std::stringstream &msg) const

virtual void	Error (std::ostream &msg) const

virtual void	Fatal (std::string const &msg) const

virtual void	Fatal (std::stringstream &msg) const

virtual void	Fatal (std::ostream &msg) const

Protected Member Functions
	SEGasCompartmentGraph (const std::string &name, Logger *logger)

void	BalanceByIntensive ()

Protected Member Functions inherited from SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink >
virtual void	BalanceByIntensive ()=0

virtual int	GetVertexIndex (const GraphVertexType &v) const

virtual const std::vector< GraphVertexType * > &	GetVerticies () const

virtual const std::vector< GraphEdgeType * > *	GetSourceEdges (const GraphVertexType &v) const

virtual const std::vector< GraphEdgeType * > *	GetTargetEdges (const GraphVertexType &v) const

Protected Member Functions inherited from SECompartmentGraph< COMPARTMENT_GRAPH_TYPES >
	SECompartmentGraph (const std::string &name, Logger *logger)

Friends
class	PBCompartment

class	SECompartmentManager

Additional Inherited Members
Protected Attributes inherited from SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink >
std::vector< GraphVertexType * >	m_Verticies

std::map< const GraphVertexType *, int >	m_VertexIndicies

std::map< const GraphVertexType , std::vector< GraphEdgeType > * >	m_SourceEdgeMap

std::map< const GraphVertexType , std::vector< GraphEdgeType > * >	m_TargetEdgeMap

Protected Attributes inherited from SECompartmentGraph< COMPARTMENT_GRAPH_TYPES >
std::string	m_Name

std::vector< CompartmentType * >	m_Compartments

std::vector< CompartmentLinkType * >	m_CompartmentLinks

Protected Attributes inherited from Loggable
bool	myLogger

Logger *	m_Logger

Constructor & Destructor Documentation

◆ SEGasCompartmentGraph()

SEGasCompartmentGraph::SEGasCompartmentGraph	(	const std::string &	name,
		Logger *	logger
	)

inlineprotected

◆ ~SEGasCompartmentGraph()

virtual SEGasCompartmentGraph::~SEGasCompartmentGraph ( )

inlinevirtual

Member Function Documentation

◆ AddGraph()

void SEGasCompartmentGraph::AddGraph ( SEGasCompartmentGraph & graph )

◆ BalanceByIntensive()

void SEGasCompartmentGraph::BalanceByIntensive ( )

protectedvirtual

Implements SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink >.

Friends And Related Function Documentation

◆ PBCompartment

friend class PBCompartment

friend

◆ SECompartmentManager

friend class SECompartmentManager