| AddCompartment(CompartmentType &cmpt) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| AddGraph(SEGasCompartmentGraph &graph) | SEGasCompartmentGraph | |
| AddLink(CompartmentLinkType &link) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| BalanceByIntensive() | SEGasCompartmentGraph | protectedvirtual |
| Clear() | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | virtual |
| Debug(std::string const &msg) const | Loggable | virtual |
| Debug(std::stringstream &msg) const | Loggable | virtual |
| Debug(std::ostream &msg) const | Loggable | virtual |
| Error(std::string const &msg) const | Loggable | virtual |
| Error(std::stringstream &msg) const | Loggable | virtual |
| Error(std::ostream &msg) const | Loggable | virtual |
| Fatal(std::string const &msg) const | Loggable | virtual |
| Fatal(std::stringstream &msg) const | Loggable | virtual |
| Fatal(std::ostream &msg) const | Loggable | virtual |
| ForceAddCompartment(CompartmentType &cmpt) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| ForceAddLink(CompartmentLinkType &link) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetCompartment(const std::string &name) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetCompartment(const std::string &name) const | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetCompartments() const | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLink(const std::string &name) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLink(const std::string &name) const | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLinks() const | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| GetLogger() const | Loggable | virtual |
| GetName() const | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | inlinevirtual |
| GetSourceEdges(const GraphVertexType &v) const | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | protectedvirtual |
| GetTargetEdges(const GraphVertexType &v) const | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | protectedvirtual |
| GetVertexIndex(const GraphVertexType &v) const | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | protectedvirtual |
| GetVerticies() const | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | protectedvirtual |
| Info(std::string const &msg) const | Loggable | virtual |
| Info(std::stringstream &msg) const | Loggable | virtual |
| Info(const std::stringstream &msg) const | Loggable | virtual |
| Info(std::ostream &msg) const | Loggable | virtual |
| Loggable(Logger *logger=nullptr) | Loggable | |
| Loggable(std::string const &logfile) | Loggable | |
| m_CompartmentLinks | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | protected |
| m_Compartments | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | protected |
| m_Logger | Loggable | protected |
| m_Name | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | protected |
| m_SourceEdgeMap | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | protected |
| m_TargetEdgeMap | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | protected |
| m_VertexIndicies | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | protected |
| m_Verticies | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | protected |
| myLogger | Loggable | protected |
| PBCompartment | SEGasCompartmentGraph | friend |
| RemoveCompartment(const CompartmentType &cmpt) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| RemoveCompartment(const std::string &name) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| RemoveLink(const CompartmentLinkType &link) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| RemoveLink(const std::string &name) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| SECompartmentGraph(const std::string &name, Logger *logger) | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | protected |
| SECompartmentManager | SEGasCompartmentGraph | friend |
| SECompartmentTransportGraph(const std::string &name, Logger *logger) | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | |
| SEGasCompartmentGraph(const std::string &name, Logger *logger) | SEGasCompartmentGraph | inlineprotected |
| SetLogger(Logger &logger) | Loggable | virtual |
| StateChange() | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | virtual |
| Warning(std::string const &msg) const | Loggable | virtual |
| Warning(std::stringstream &msg) const | Loggable | virtual |
| Warning(std::ostream &msg) const | Loggable | virtual |
| ~Loggable() | Loggable | virtual |
| ~SECompartmentGraph() | SECompartmentGraph< COMPARTMENT_GRAPH_TYPES > | virtual |
| ~SECompartmentTransportGraph() | SECompartmentTransportGraph< SEGasTransportGraph, SEGasTransportVertex, SEGasTransportEdge, SEGasCompartment, SEGasCompartmentLink > | virtual |
| ~SEGasCompartmentGraph() | SEGasCompartmentGraph | inlinevirtual |
