SETissueCompartment Class Reference

#include <SETissueCompartment.h>

Inheritance diagram for SETissueCompartment:

Public Member Functions
virtual	~SETissueCompartment ()
void	Clear () override
const SEScalar *	GetScalar (const std::string &name) override
bool	HasChildren () const override
virtual const std::vector< SETissueCompartment * > &	GetChildren ()=delete
virtual const std::vector< SETissueCompartment * > &	GetLeaves ()=delete
virtual SELiquidCompartment &	GetExtracellular ()
virtual const SELiquidCompartment &	GetExtracellular () const
virtual SELiquidCompartment &	GetIntracellular ()
virtual const SELiquidCompartment &	GetIntracellular () const
virtual void	StateChange () override
virtual bool	HasAcidicPhospohlipidConcentration () const
virtual SEScalarMassPerMass &	GetAcidicPhospohlipidConcentration ()
virtual double	GetAcidicPhospohlipidConcentration (const MassPerMassUnit &unit) const
virtual bool	HasMatrixVolume () const
virtual SEScalarVolume &	GetMatrixVolume ()
virtual double	GetMatrixVolume (const VolumeUnit &unit) const
virtual bool	HasNeutralLipidsVolumeFraction () const
virtual SEScalar0To1 &	GetNeutralLipidsVolumeFraction ()
virtual double	GetNeutralLipidsVolumeFraction () const
virtual bool	HasNeutralPhospholipidsVolumeFraction () const
virtual SEScalar0To1 &	GetNeutralPhospholipidsVolumeFraction ()
virtual double	GetNeutralPhospholipidsVolumeFraction () const
virtual bool	HasTissueToPlasmaAlbuminRatio () const
virtual SEScalar &	GetTissueToPlasmaAlbuminRatio ()
virtual double	GetTissueToPlasmaAlbuminRatio () const
virtual bool	HasTissueToPlasmaAlphaAcidGlycoproteinRatio () const
virtual SEScalar &	GetTissueToPlasmaAlphaAcidGlycoproteinRatio ()
virtual double	GetTissueToPlasmaAlphaAcidGlycoproteinRatio () const
virtual bool	HasTissueToPlasmaLipoproteinRatio () const
virtual SEScalar &	GetTissueToPlasmaLipoproteinRatio ()
virtual double	GetTissueToPlasmaLipoproteinRatio () const
virtual bool	HasTotalMass () const
virtual SEScalarMass &	GetTotalMass ()
virtual double	GetTotalMass (const MassUnit &unit) const
virtual const SEScalarVolume &	GetTotalVolume ()
virtual double	GetTotalVolume (const VolumeUnit &unit) const
Public Member Functions inherited from SECompartment
virtual	~SECompartment ()
virtual std::string	GetName () const
Public Member Functions inherited from Loggable
	Loggable (Logger *logger=nullptr)
	Loggable (std::string const &logfile)
virtual	~Loggable ()
virtual Logger *	GetLogger () const
virtual void	SetLogger (Logger &logger)
virtual void	Debug (std::string const &msg) const
virtual void	Debug (std::stringstream &msg) const
virtual void	Debug (std::ostream &msg) const
virtual void	Info (std::string const &msg) const
virtual void	Info (std::stringstream &msg) const
virtual void	Info (const std::stringstream &msg) const
virtual void	Info (std::ostream &msg) const
virtual void	Warning (std::string const &msg) const
virtual void	Warning (std::stringstream &msg) const
virtual void	Warning (std::ostream &msg) const
virtual void	Error (std::string const &msg) const
virtual void	Error (std::stringstream &msg) const
virtual void	Error (std::ostream &msg) const
virtual void	Fatal (std::string const &msg) const
virtual void	Fatal (std::stringstream &msg) const
virtual void	Fatal (std::ostream &msg) const

Protected Member Functions
	SETissueCompartment (const std::string &name, SELiquidCompartment &extracellular, SELiquidCompartment &intracellular, Logger *logger)
Protected Member Functions inherited from SECompartment
	SECompartment (const std::string &name, Logger *logger)

Protected Attributes
SEScalarMassPerMass *	m_AcidicPhospohlipidConcentration
SEScalarVolume *	m_MatrixVolume
SEScalar0To1 *	m_NeutralLipidsVolumeFraction
SEScalar0To1 *	m_NeutralPhospholipidsVolumeFraction
SEScalar *	m_TissueToPlasmaAlbuminRatio
SEScalar *	m_TissueToPlasmaAlphaAcidGlycoproteinRatio
SEScalar *	m_TissueToPlasmaLipoproteinRatio
SEScalarMass *	m_TotalMass
SEScalarVolume *	m_TotalVolume
SELiquidCompartment &	m_Extracellular
SELiquidCompartment &	m_Intracellular
Protected Attributes inherited from SECompartment
std::string	m_Name
Protected Attributes inherited from Loggable
bool	myLogger
Logger *	m_Logger

Friends
class	PBCompartment
class	SECompartmentManager

Additional Inherited Members
Static Public Member Functions inherited from SECompartment
template<typename CompartmentType >
static void	FindLeaves (CompartmentType &cmpt, std::vector< CompartmentType * > &leaves)

Constructor & Destructor Documentation

SETissueCompartment()

SETissueCompartment::SETissueCompartment ( const std::string &  name, SELiquidCompartment &  extracellular, SELiquidCompartment &  intracellular, Logger *  logger  )

protected

~SETissueCompartment()

SETissueCompartment::~SETissueCompartment ( )

virtual

Member Function Documentation

Clear()

void SETissueCompartment::Clear ( )

overridevirtual

Reimplemented from SECompartment.

GetAcidicPhospohlipidConcentration() [1/2]

SEScalarMassPerMass & SETissueCompartment::GetAcidicPhospohlipidConcentration ( )

virtual

GetAcidicPhospohlipidConcentration() [2/2]

double SETissueCompartment::GetAcidicPhospohlipidConcentration ( const MassPerMassUnit &  unit ) const

virtual

GetChildren()

virtual const std::vector<SETissueCompartment*>& SETissueCompartment::GetChildren ( )

virtualdelete

GetExtracellular() [1/2]

virtual SELiquidCompartment& SETissueCompartment::GetExtracellular ( )

inlinevirtual

GetExtracellular() [2/2]

virtual const SELiquidCompartment& SETissueCompartment::GetExtracellular ( ) const

inlinevirtual

GetIntracellular() [1/2]

virtual SELiquidCompartment& SETissueCompartment::GetIntracellular ( )

inlinevirtual

GetIntracellular() [2/2]

virtual const SELiquidCompartment& SETissueCompartment::GetIntracellular ( ) const

inlinevirtual

GetLeaves()

virtual const std::vector<SETissueCompartment*>& SETissueCompartment::GetLeaves ( )

virtualdelete

GetMatrixVolume() [1/2]

SEScalarVolume & SETissueCompartment::GetMatrixVolume ( )

virtual

GetMatrixVolume() [2/2]

double SETissueCompartment::GetMatrixVolume ( const VolumeUnit &  unit ) const

virtual

GetNeutralLipidsVolumeFraction() [1/2]

SEScalar0To1 & SETissueCompartment::GetNeutralLipidsVolumeFraction ( )

virtual

GetNeutralLipidsVolumeFraction() [2/2]

double SETissueCompartment::GetNeutralLipidsVolumeFraction ( ) const

virtual

GetNeutralPhospholipidsVolumeFraction() [1/2]

SEScalar0To1 & SETissueCompartment::GetNeutralPhospholipidsVolumeFraction ( )

virtual

GetNeutralPhospholipidsVolumeFraction() [2/2]

double SETissueCompartment::GetNeutralPhospholipidsVolumeFraction ( ) const

virtual

GetScalar()

const SEScalar * SETissueCompartment::GetScalar ( const std::string &  name )

overridevirtual

Implements SECompartment.

GetTissueToPlasmaAlbuminRatio() [1/2]

SEScalar & SETissueCompartment::GetTissueToPlasmaAlbuminRatio ( )

virtual

GetTissueToPlasmaAlbuminRatio() [2/2]

double SETissueCompartment::GetTissueToPlasmaAlbuminRatio ( ) const

virtual

GetTissueToPlasmaAlphaAcidGlycoproteinRatio() [1/2]

SEScalar & SETissueCompartment::GetTissueToPlasmaAlphaAcidGlycoproteinRatio ( )

virtual

GetTissueToPlasmaAlphaAcidGlycoproteinRatio() [2/2]

double SETissueCompartment::GetTissueToPlasmaAlphaAcidGlycoproteinRatio ( ) const

virtual

GetTissueToPlasmaLipoproteinRatio() [1/2]

SEScalar & SETissueCompartment::GetTissueToPlasmaLipoproteinRatio ( )

virtual

GetTissueToPlasmaLipoproteinRatio() [2/2]

double SETissueCompartment::GetTissueToPlasmaLipoproteinRatio ( ) const

virtual

GetTotalMass() [1/2]

SEScalarMass & SETissueCompartment::GetTotalMass ( )

virtual

GetTotalMass() [2/2]

double SETissueCompartment::GetTotalMass ( const MassUnit &  unit ) const

virtual

GetTotalVolume() [1/2]

const SEScalarVolume & SETissueCompartment::GetTotalVolume ( )

virtual

GetTotalVolume() [2/2]

double SETissueCompartment::GetTotalVolume ( const VolumeUnit &  unit ) const

virtual

HasAcidicPhospohlipidConcentration()

bool SETissueCompartment::HasAcidicPhospohlipidConcentration ( ) const

virtual

HasChildren()

bool SETissueCompartment::HasChildren ( ) const

inlineoverridevirtual

Implements SECompartment.

HasMatrixVolume()

bool SETissueCompartment::HasMatrixVolume ( ) const

virtual

HasNeutralLipidsVolumeFraction()

bool SETissueCompartment::HasNeutralLipidsVolumeFraction ( ) const

virtual

HasNeutralPhospholipidsVolumeFraction()

bool SETissueCompartment::HasNeutralPhospholipidsVolumeFraction ( ) const

virtual

HasTissueToPlasmaAlbuminRatio()

bool SETissueCompartment::HasTissueToPlasmaAlbuminRatio ( ) const

virtual

HasTissueToPlasmaAlphaAcidGlycoproteinRatio()

bool SETissueCompartment::HasTissueToPlasmaAlphaAcidGlycoproteinRatio ( ) const

virtual

HasTissueToPlasmaLipoproteinRatio()

bool SETissueCompartment::HasTissueToPlasmaLipoproteinRatio ( ) const

virtual

HasTotalMass()

bool SETissueCompartment::HasTotalMass ( ) const

virtual

StateChange()

void SETissueCompartment::StateChange ( )

overridevirtual

Implements SECompartment.

Friends And Related Function Documentation

PBCompartment

friend class PBCompartment

friend

SECompartmentManager

friend class SECompartmentManager

friend

Member Data Documentation

m_AcidicPhospohlipidConcentration

SEScalarMassPerMass* SETissueCompartment::m_AcidicPhospohlipidConcentration

protected

m_Extracellular

SELiquidCompartment& SETissueCompartment::m_Extracellular

protected

m_Intracellular

SELiquidCompartment& SETissueCompartment::m_Intracellular

protected

m_MatrixVolume

SEScalarVolume* SETissueCompartment::m_MatrixVolume

protected

m_NeutralLipidsVolumeFraction

SEScalar0To1* SETissueCompartment::m_NeutralLipidsVolumeFraction

protected

m_NeutralPhospholipidsVolumeFraction

SEScalar0To1* SETissueCompartment::m_NeutralPhospholipidsVolumeFraction

protected

m_TissueToPlasmaAlbuminRatio

SEScalar* SETissueCompartment::m_TissueToPlasmaAlbuminRatio

protected

m_TissueToPlasmaAlphaAcidGlycoproteinRatio

SEScalar* SETissueCompartment::m_TissueToPlasmaAlphaAcidGlycoproteinRatio

protected

m_TissueToPlasmaLipoproteinRatio

SEScalar* SETissueCompartment::m_TissueToPlasmaLipoproteinRatio

protected

m_TotalMass

SEScalarMass* SETissueCompartment::m_TotalMass

protected

m_TotalVolume

SEScalarVolume* SETissueCompartment::m_TotalVolume

protected