#include <SESubstance.h>

Inherits Loggable.

Public Member Functions

 SESubstance (Logger *logger)
 
virtual ~SESubstance ()
 
virtual void Clear ()
 
bool SerializeToString (std::string &output, SerializationFormat m) const
 
bool SerializeToFile (const std::string &filename, SerializationFormat m) const
 
bool SerializeFromString (const std::string &src, SerializationFormat m)
 
bool SerializeFromFile (const std::string &filename, SerializationFormat m)
 
virtual const SEScalarGetScalar (const std::string &name)
 
virtual std::string GetName () const
 
virtual void SetName (const std::string &name)
 
virtual bool HasName () const
 
virtual void InvalidateName ()
 
virtual eSubstance_State GetState () const
 
virtual void SetState (eSubstance_State state)
 
virtual bool HasState () const
 
virtual void InvalidateState ()
 
virtual bool HasDensity () const
 
virtual SEScalarMassPerVolumeGetDensity ()
 
virtual double GetDensity (const MassPerVolumeUnit &unit) const
 
virtual bool HasMolarMass () const
 
virtual SEScalarMassPerAmountGetMolarMass ()
 
virtual double GetMolarMass (const MassPerAmountUnit &unit) const
 
virtual bool HasMaximumDiffusionFlux () const
 
virtual SEScalarMassPerAreaTimeGetMaximumDiffusionFlux ()
 
virtual double GetMaximumDiffusionFlux (const MassPerAreaTimeUnit &unit) const
 
virtual bool HasMichaelisCoefficient () const
 
virtual SEScalarGetMichaelisCoefficient ()
 
virtual double GetMichaelisCoefficient () const
 
virtual bool HasAerosolization () const
 
virtual SESubstanceAerosolizationGetAerosolization ()
 
virtual const SESubstanceAerosolizationGetAerosolization () const
 
virtual void RemoveAerosolization ()
 
virtual bool HasBloodConcentration () const
 
virtual SEScalarMassPerVolumeGetBloodConcentration ()
 
virtual double GetBloodConcentration (const MassPerVolumeUnit &unit) const
 
virtual bool HasMassInBody () const
 
virtual SEScalarMassGetMassInBody ()
 
virtual double GetMassInBody (const MassUnit &unit) const
 
virtual bool HasMassInBlood () const
 
virtual SEScalarMassGetMassInBlood ()
 
virtual double GetMassInBlood (const MassUnit &unit) const
 
virtual bool HasMassInTissue () const
 
virtual SEScalarMassGetMassInTissue ()
 
virtual double GetMassInTissue (const MassUnit &unit) const
 
virtual bool HasPlasmaConcentration () const
 
virtual SEScalarMassPerVolumeGetPlasmaConcentration ()
 
virtual double GetPlasmaConcentration (const MassPerVolumeUnit &unit) const
 
virtual bool HasSystemicMassCleared () const
 
virtual SEScalarMassGetSystemicMassCleared ()
 
virtual double GetSystemicMassCleared (const MassUnit &unit) const
 
virtual bool HasTissueConcentration () const
 
virtual SEScalarMassPerVolumeGetTissueConcentration ()
 
virtual double GetTissueConcentration (const MassPerVolumeUnit &unit) const
 
virtual bool HasAlveolarTransfer () const
 
virtual SEScalarVolumePerTimeGetAlveolarTransfer ()
 
virtual double GetAlveolarTransfer (const VolumePerTimeUnit &unit) const
 
virtual bool HasDiffusingCapacity () const
 
virtual SEScalarVolumePerTimePressureGetDiffusingCapacity ()
 
virtual double GetDiffusingCapacity (const VolumePerTimePressureUnit &unit) const
 
virtual bool HasEndTidalFraction () const
 
virtual SEScalar0To1GetEndTidalFraction ()
 
virtual double GetEndTidalFraction () const
 
virtual bool HasEndTidalPressure () const
 
virtual SEScalarPressureGetEndTidalPressure ()
 
virtual double GetEndTidalPressure (const PressureUnit &unit) const
 
virtual bool HasRelativeDiffusionCoefficient () const
 
virtual SEScalarGetRelativeDiffusionCoefficient ()
 
virtual double GetRelativeDiffusionCoefficient () const
 
virtual bool HasSolubilityCoefficient () const
 
virtual SEScalarInversePressureGetSolubilityCoefficient ()
 
virtual double GetSolubilityCoefficient (const InversePressureUnit &unit) const
 
virtual bool HasClearance () const
 
virtual SESubstanceClearanceGetClearance ()
 
virtual const SESubstanceClearanceGetClearance () const
 
virtual void RemoveClearance ()
 
virtual bool HasPK () const
 
virtual SESubstancePharmacokineticsGetPK ()
 
virtual const SESubstancePharmacokineticsGetPK () const
 
virtual void RemovePK ()
 
virtual bool HasPD () const
 
virtual SESubstancePharmacodynamicsGetPD ()
 
virtual const SESubstancePharmacodynamicsGetPD () const
 
virtual void RemovePD ()
 
- Public Member Functions inherited from Loggable
 Loggable ()
 
 Loggable (Logger *log)
 
virtual ~Loggable ()
 
virtual LoggerGetLogger () const
 
virtual void Debug (std::string const &msg, std::string const &origin=empty) const
 
virtual void Debug (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Debug (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Info (std::string const &msg, std::string const &origin=empty) const
 
virtual void Info (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Info (const std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Info (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Warning (std::string const &msg, std::string const &origin=empty) const
 
virtual void Warning (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Warning (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Error (std::string const &msg, std::string const &origin=empty) const
 
virtual void Error (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Error (std::ostream &msg, std::string const &origin=empty) const
 
virtual void Fatal (std::string const &msg, std::string const &origin=empty) const
 
virtual void Fatal (std::stringstream &msg, std::string const &origin=empty) const
 
virtual void Fatal (std::ostream &msg, std::string const &origin=empty) const
 

Protected Attributes

std::string m_Name
 
eSubstance_State m_State
 
SEScalarMassPerVolumem_Density
 
SEScalarMassPerAmountm_MolarMass
 
SEScalarMassPerAreaTimem_MaximumDiffusionFlux
 
SEScalarm_MichaelisCoefficient
 
SESubstanceAerosolizationm_Aerosolization
 
SEScalarMassPerVolumem_BloodConcentration
 
SEScalarMassm_MassInBody
 
SEScalarMassm_MassInBlood
 
SEScalarMassm_MassInTissue
 
SEScalarMassPerVolumem_PlasmaConcentration
 
SEScalarMassm_SystemicMassCleared
 
SEScalarMassPerVolumem_TissueConcentration
 
SEScalarVolumePerTimem_AlveolarTransfer
 
SEScalarVolumePerTimePressurem_DiffusingCapacity
 
SEScalar0To1m_EndTidalFraction
 
SEScalarPressurem_EndTidalPressure
 
SEScalarm_RelativeDiffusionCoefficient
 
SEScalarInversePressurem_SolubilityCoefficient
 
SESubstanceClearancem_Clearance
 
SESubstancePharmacokineticsm_PK
 
SESubstancePharmacodynamicsm_PD
 
- Protected Attributes inherited from Loggable
Loggerm_Logger
 

Friends

class PBSubstance
 

Additional Inherited Members

- Static Public Attributes inherited from Loggable
static const std::string empty
 

Constructor & Destructor Documentation

◆ SESubstance()

SESubstance::SESubstance ( Logger logger)

◆ ~SESubstance()

SESubstance::~SESubstance ( )
virtual

Member Function Documentation

◆ Clear()

void SESubstance::Clear ( )
virtual

◆ GetAerosolization() [1/2]

SESubstanceAerosolization & SESubstance::GetAerosolization ( )
virtual

◆ GetAerosolization() [2/2]

const SESubstanceAerosolization * SESubstance::GetAerosolization ( ) const
virtual

◆ GetAlveolarTransfer() [1/2]

SEScalarVolumePerTime & SESubstance::GetAlveolarTransfer ( )
virtual

◆ GetAlveolarTransfer() [2/2]

double SESubstance::GetAlveolarTransfer ( const VolumePerTimeUnit unit) const
virtual

◆ GetBloodConcentration() [1/2]

SEScalarMassPerVolume & SESubstance::GetBloodConcentration ( )
virtual

◆ GetBloodConcentration() [2/2]

double SESubstance::GetBloodConcentration ( const MassPerVolumeUnit unit) const
virtual

◆ GetClearance() [1/2]

SESubstanceClearance & SESubstance::GetClearance ( )
virtual

◆ GetClearance() [2/2]

const SESubstanceClearance * SESubstance::GetClearance ( ) const
virtual

◆ GetDensity() [1/2]

SEScalarMassPerVolume & SESubstance::GetDensity ( )
virtual

◆ GetDensity() [2/2]

double SESubstance::GetDensity ( const MassPerVolumeUnit unit) const
virtual

◆ GetDiffusingCapacity() [1/2]

SEScalarVolumePerTimePressure & SESubstance::GetDiffusingCapacity ( )
virtual

◆ GetDiffusingCapacity() [2/2]

double SESubstance::GetDiffusingCapacity ( const VolumePerTimePressureUnit unit) const
virtual

◆ GetEndTidalFraction() [1/2]

SEScalar0To1 & SESubstance::GetEndTidalFraction ( )
virtual

◆ GetEndTidalFraction() [2/2]

double SESubstance::GetEndTidalFraction ( ) const
virtual

◆ GetEndTidalPressure() [1/2]

SEScalarPressure & SESubstance::GetEndTidalPressure ( )
virtual

◆ GetEndTidalPressure() [2/2]

double SESubstance::GetEndTidalPressure ( const PressureUnit unit) const
virtual

◆ GetMassInBlood() [1/2]

SEScalarMass & SESubstance::GetMassInBlood ( )
virtual

◆ GetMassInBlood() [2/2]

double SESubstance::GetMassInBlood ( const MassUnit unit) const
virtual

◆ GetMassInBody() [1/2]

SEScalarMass & SESubstance::GetMassInBody ( )
virtual

◆ GetMassInBody() [2/2]

double SESubstance::GetMassInBody ( const MassUnit unit) const
virtual

◆ GetMassInTissue() [1/2]

SEScalarMass & SESubstance::GetMassInTissue ( )
virtual

◆ GetMassInTissue() [2/2]

double SESubstance::GetMassInTissue ( const MassUnit unit) const
virtual

◆ GetMaximumDiffusionFlux() [1/2]

SEScalarMassPerAreaTime & SESubstance::GetMaximumDiffusionFlux ( )
virtual

◆ GetMaximumDiffusionFlux() [2/2]

double SESubstance::GetMaximumDiffusionFlux ( const MassPerAreaTimeUnit unit) const
virtual

◆ GetMichaelisCoefficient() [1/2]

SEScalar & SESubstance::GetMichaelisCoefficient ( )
virtual

◆ GetMichaelisCoefficient() [2/2]

double SESubstance::GetMichaelisCoefficient ( ) const
virtual

◆ GetMolarMass() [1/2]

SEScalarMassPerAmount & SESubstance::GetMolarMass ( )
virtual

◆ GetMolarMass() [2/2]

double SESubstance::GetMolarMass ( const MassPerAmountUnit unit) const
virtual

◆ GetName()

std::string SESubstance::GetName ( ) const
virtual

◆ GetPD() [1/2]

SESubstancePharmacodynamics & SESubstance::GetPD ( )
virtual

◆ GetPD() [2/2]

const SESubstancePharmacodynamics * SESubstance::GetPD ( ) const
virtual

◆ GetPK() [1/2]

SESubstancePharmacokinetics & SESubstance::GetPK ( )
virtual

◆ GetPK() [2/2]

const SESubstancePharmacokinetics * SESubstance::GetPK ( ) const
virtual

◆ GetPlasmaConcentration() [1/2]

SEScalarMassPerVolume & SESubstance::GetPlasmaConcentration ( )
virtual

◆ GetPlasmaConcentration() [2/2]

double SESubstance::GetPlasmaConcentration ( const MassPerVolumeUnit unit) const
virtual

◆ GetRelativeDiffusionCoefficient() [1/2]

SEScalar & SESubstance::GetRelativeDiffusionCoefficient ( )
virtual

◆ GetRelativeDiffusionCoefficient() [2/2]

double SESubstance::GetRelativeDiffusionCoefficient ( ) const
virtual

◆ GetScalar()

const SEScalar * SESubstance::GetScalar ( const std::string &  name)
virtual

◆ GetSolubilityCoefficient() [1/2]

SEScalarInversePressure & SESubstance::GetSolubilityCoefficient ( )
virtual

◆ GetSolubilityCoefficient() [2/2]

double SESubstance::GetSolubilityCoefficient ( const InversePressureUnit unit) const
virtual

◆ GetState()

eSubstance_State SESubstance::GetState ( ) const
virtual

◆ GetSystemicMassCleared() [1/2]

SEScalarMass & SESubstance::GetSystemicMassCleared ( )
virtual

◆ GetSystemicMassCleared() [2/2]

double SESubstance::GetSystemicMassCleared ( const MassUnit unit) const
virtual

◆ GetTissueConcentration() [1/2]

SEScalarMassPerVolume & SESubstance::GetTissueConcentration ( )
virtual

◆ GetTissueConcentration() [2/2]

double SESubstance::GetTissueConcentration ( const MassPerVolumeUnit unit) const
virtual

◆ HasAerosolization()

bool SESubstance::HasAerosolization ( ) const
virtual

◆ HasAlveolarTransfer()

bool SESubstance::HasAlveolarTransfer ( ) const
virtual

◆ HasBloodConcentration()

bool SESubstance::HasBloodConcentration ( ) const
virtual

◆ HasClearance()

bool SESubstance::HasClearance ( ) const
virtual

◆ HasDensity()

bool SESubstance::HasDensity ( ) const
virtual

◆ HasDiffusingCapacity()

bool SESubstance::HasDiffusingCapacity ( ) const
virtual

◆ HasEndTidalFraction()

bool SESubstance::HasEndTidalFraction ( ) const
virtual

◆ HasEndTidalPressure()

bool SESubstance::HasEndTidalPressure ( ) const
virtual

◆ HasMassInBlood()

bool SESubstance::HasMassInBlood ( ) const
virtual

◆ HasMassInBody()

bool SESubstance::HasMassInBody ( ) const
virtual

◆ HasMassInTissue()

bool SESubstance::HasMassInTissue ( ) const
virtual

◆ HasMaximumDiffusionFlux()

bool SESubstance::HasMaximumDiffusionFlux ( ) const
virtual

◆ HasMichaelisCoefficient()

bool SESubstance::HasMichaelisCoefficient ( ) const
virtual

◆ HasMolarMass()

bool SESubstance::HasMolarMass ( ) const
virtual

◆ HasName()

bool SESubstance::HasName ( ) const
virtual

◆ HasPD()

bool SESubstance::HasPD ( ) const
virtual

◆ HasPK()

bool SESubstance::HasPK ( ) const
virtual

◆ HasPlasmaConcentration()

bool SESubstance::HasPlasmaConcentration ( ) const
virtual

◆ HasRelativeDiffusionCoefficient()

bool SESubstance::HasRelativeDiffusionCoefficient ( ) const
virtual

◆ HasSolubilityCoefficient()

bool SESubstance::HasSolubilityCoefficient ( ) const
virtual

◆ HasState()

bool SESubstance::HasState ( ) const
virtual

◆ HasSystemicMassCleared()

bool SESubstance::HasSystemicMassCleared ( ) const
virtual

◆ HasTissueConcentration()

bool SESubstance::HasTissueConcentration ( ) const
virtual

◆ InvalidateName()

void SESubstance::InvalidateName ( )
virtual

◆ InvalidateState()

void SESubstance::InvalidateState ( )
virtual

◆ RemoveAerosolization()

void SESubstance::RemoveAerosolization ( )
virtual

◆ RemoveClearance()

void SESubstance::RemoveClearance ( )
virtual

◆ RemovePD()

void SESubstance::RemovePD ( )
virtual

◆ RemovePK()

void SESubstance::RemovePK ( )
virtual

◆ SerializeFromFile()

bool SESubstance::SerializeFromFile ( const std::string &  filename,
SerializationFormat  m 
)

◆ SerializeFromString()

bool SESubstance::SerializeFromString ( const std::string &  src,
SerializationFormat  m 
)

◆ SerializeToFile()

bool SESubstance::SerializeToFile ( const std::string &  filename,
SerializationFormat  m 
) const

◆ SerializeToString()

bool SESubstance::SerializeToString ( std::string &  output,
SerializationFormat  m 
) const

◆ SetName()

void SESubstance::SetName ( const std::string &  name)
virtual

◆ SetState()

void SESubstance::SetState ( eSubstance_State  state)
virtual

Friends And Related Function Documentation

◆ PBSubstance

friend class PBSubstance
friend

Member Data Documentation

◆ m_Aerosolization

SESubstanceAerosolization* SESubstance::m_Aerosolization
protected

◆ m_AlveolarTransfer

SEScalarVolumePerTime* SESubstance::m_AlveolarTransfer
protected

◆ m_BloodConcentration

SEScalarMassPerVolume* SESubstance::m_BloodConcentration
protected

◆ m_Clearance

SESubstanceClearance* SESubstance::m_Clearance
protected

◆ m_Density

SEScalarMassPerVolume* SESubstance::m_Density
protected

◆ m_DiffusingCapacity

SEScalarVolumePerTimePressure* SESubstance::m_DiffusingCapacity
protected

◆ m_EndTidalFraction

SEScalar0To1* SESubstance::m_EndTidalFraction
protected

◆ m_EndTidalPressure

SEScalarPressure* SESubstance::m_EndTidalPressure
protected

◆ m_MassInBlood

SEScalarMass* SESubstance::m_MassInBlood
protected

◆ m_MassInBody

SEScalarMass* SESubstance::m_MassInBody
protected

◆ m_MassInTissue

SEScalarMass* SESubstance::m_MassInTissue
protected

◆ m_MaximumDiffusionFlux

SEScalarMassPerAreaTime* SESubstance::m_MaximumDiffusionFlux
protected

◆ m_MichaelisCoefficient

SEScalar* SESubstance::m_MichaelisCoefficient
protected

◆ m_MolarMass

SEScalarMassPerAmount* SESubstance::m_MolarMass
protected

◆ m_Name

std::string SESubstance::m_Name
protected

◆ m_PD

SESubstancePharmacodynamics* SESubstance::m_PD
protected

◆ m_PK

SESubstancePharmacokinetics* SESubstance::m_PK
protected

◆ m_PlasmaConcentration

SEScalarMassPerVolume* SESubstance::m_PlasmaConcentration
protected

◆ m_RelativeDiffusionCoefficient

SEScalar* SESubstance::m_RelativeDiffusionCoefficient
protected

◆ m_SolubilityCoefficient

SEScalarInversePressure* SESubstance::m_SolubilityCoefficient
protected

◆ m_State

eSubstance_State SESubstance::m_State
protected

◆ m_SystemicMassCleared

SEScalarMass* SESubstance::m_SystemicMassCleared
protected

◆ m_TissueConcentration

SEScalarMassPerVolume* SESubstance::m_TissueConcentration
protected