#include <SEGasCompartment.h>

Inherits SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity >.

Public Member Functions
virtual	~SEGasCompartment ()

void	Clear () override

const SEScalar *	GetScalar (const std::string &name) override

void	StateChange () override

virtual void	Balance (BalanceGasBy e)

virtual bool	HasDiffusionSurfaceArea () const

virtual SEScalarArea &	GetDiffusionSurfaceArea ()

virtual double	GetDiffusionSurfaceArea (const AreaUnit &unit) const

virtual bool	HasVentilation () const

virtual SEScalarVolumePerTime &	GetVentilation ()

virtual double	GetVentilation (const VolumePerTimeUnit &unit) const

virtual bool	HasVentilationPerfusionRatio () const

virtual SEScalar &	GetVentilationPerfusionRatio ()

virtual double	GetVentilationPerfusionRatio () const

virtual void	AddChild (SEGasCompartment &child)

virtual const std::vector< SEGasCompartment * > &	GetChildren ()

virtual const std::vector< SEGasCompartment * > &	GetLeaves ()

Public Member Functions inherited from SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity >
virtual	~SEFluidCompartment ()

void	Clear () override

std::string	GetName () const override

const SEScalar *	GetScalar (const std::string &name) override

bool	HasChildren () const override

virtual bool	HasNodeMapping () const

virtual SECompartmentNodes< FLUID_COMPARTMENT_NODE > &	GetNodeMapping ()

virtual void	MapNode (SEFluidCircuitNode &node)

virtual void	Sample (bool CycleStart)

virtual void	SampleFlow ()

virtual bool	HasInFlow () const

virtual const SEScalarVolumePerTime &	GetInFlow () const

virtual double	GetInFlow (const VolumePerTimeUnit &unit) const

virtual bool	HasAverageInFlow () const

virtual const SEScalarVolumePerTime &	GetAverageInFlow () const

virtual double	GetAverageInFlow (const VolumePerTimeUnit &unit) const

virtual bool	HasOutFlow () const

virtual const SEScalarVolumePerTime &	GetOutFlow () const

virtual double	GetOutFlow (const VolumePerTimeUnit &unit) const

virtual bool	HasAverageOutFlow () const

virtual const SEScalarVolumePerTime &	GetAverageOutFlow () const

virtual double	GetAverageOutFlow (const VolumePerTimeUnit &unit) const

virtual bool	HasPressure () const

virtual SEScalarPressure &	GetPressure ()

virtual double	GetPressure (const PressureUnit &unit) const

virtual bool	HasVolume () const

virtual SEScalarVolume &	GetVolume ()

virtual double	GetVolume (const VolumeUnit &unit) const

virtual bool	HasSubstanceQuantities () const

virtual bool	HasSubstanceQuantity (const SESubstance &substance) const

virtual SubstanceQuantityType *	GetSubstanceQuantity (const SESubstance &substance) const

virtual const std::vector< SubstanceQuantityType * > &	GetSubstanceQuantities () const

virtual void	ZeroSubstanceQuantities ()

virtual void	AddLink (LinkType &link)

virtual void	RemoveLink (LinkType &link)

virtual void	RemoveLinks ()

virtual const std::vector< LinkType * > &	GetLinks ()

virtual bool	HasChild (const SEFluidCompartment &cmpt)

Public Member Functions inherited from SECompartment
virtual	~SECompartment ()

virtual void	Clear ()

virtual std::string	GetName () const

virtual const SEScalar *	GetScalar (const std::string &name)=0

virtual bool	HasChildren () const =0

virtual void	StateChange ()=0

Public Member Functions inherited from Loggable
	Loggable (Logger *logger=nullptr)

	Loggable (std::string const &logfile)

virtual	~Loggable ()

virtual Logger *	GetLogger () const

virtual void	SetLogger (Logger &logger)

virtual void	Debug (std::string const &msg) const

virtual void	Debug (std::stringstream &msg) const

virtual void	Debug (std::ostream &msg) const

virtual void	Info (std::string const &msg) const

virtual void	Info (std::stringstream &msg) const

virtual void	Info (const std::stringstream &msg) const

virtual void	Info (std::ostream &msg) const

virtual void	Warning (std::string const &msg) const

virtual void	Warning (std::stringstream &msg) const

virtual void	Warning (std::ostream &msg) const

virtual void	Error (std::string const &msg) const

virtual void	Error (std::stringstream &msg) const

virtual void	Error (std::ostream &msg) const

virtual void	Fatal (std::string const &msg) const

virtual void	Fatal (std::stringstream &msg) const

virtual void	Fatal (std::ostream &msg) const

Protected Member Functions
	SEGasCompartment (const std::string &name, Logger *logger)

virtual SEGasSubstanceQuantity &	CreateSubstanceQuantity (SESubstance &substance, bool zeroOut=true)

Protected Member Functions inherited from SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity >
	SEFluidCompartment (const std::string &name, Logger *logger)

virtual void	RemoveSubstanceQuantity (const SESubstance &substance)

bool	HasQuantity () const override

SEScalarVolume &	GetQuantity () override

virtual double	CalculateInFlow_mL_Per_s () const

virtual double	CalculateOutFlow_mL_Per_s () const

std::vector< TransportSubstanceType * > &	GetTransportSubstances () override

Protected Member Functions inherited from SECompartment
	SECompartment (const std::string &name, Logger *logger)

Protected Attributes
SEScalarArea *	m_DiffusionSurfaceArea

SEScalarVolumePerTime *	m_Ventilation

SEScalar *	m_VentilationPerfusionRatio

std::vector< SEGasCompartment * >	m_Children

std::vector< SEGasCompartment * >	m_Leaves

Protected Attributes inherited from SEFluidCompartment< SEGasCompartmentLink, SEGasTransportVertex, SEGasTransportSubstance, SEGasSubstanceQuantity >
SEScalarVolumePerTime *	m_InFlow

SEScalarVolumePerTime *	m_OutFlow

bool	m_SampleFlow

SEScalarVolumePerTime *	m_AverageInFlow

SEScalarVolumePerTime *	m_AverageOutFlow

SERunningAverage *	m_AverageInFlow_mL_Per_s

SERunningAverage *	m_AverageOutFlow_mL_Per_s

SEScalarPressure *	m_Pressure

SEScalarVolume *	m_Volume

std::vector< SubstanceQuantityType * >	m_SubstanceQuantities

std::vector< TransportSubstanceType * >	m_TransportSubstances

std::vector< LinkType * >	m_Links

std::vector< LinkType * >	m_IncomingLinks

std::vector< LinkType * >	m_OutgoingLinks

std::vector< SEFluidCompartment * >	m_FluidChildren

SECompartmentNodes< FLUID_COMPARTMENT_NODE >	m_Nodes

Protected Attributes inherited from SECompartment
std::string	m_Name

Protected Attributes inherited from Loggable
bool	myLogger

Logger *	m_Logger

Friends
class	PBCompartment

class	SECompartmentManager

Additional Inherited Members
Static Public Member Functions inherited from SECompartment
template<typename CompartmentType >
static void	FindLeaves (CompartmentType &cmpt, std::vector< CompartmentType * > &leaves)

Constructor & Destructor Documentation

◆ SEGasCompartment()

SEGasCompartment::SEGasCompartment	(	const std::string &	name,
		Logger *	logger
	)

protected

◆ ~SEGasCompartment()

SEGasCompartment::~SEGasCompartment ( )

virtual

Member Function Documentation

◆ AddChild()

void SEGasCompartment::AddChild ( SEGasCompartment & child )

virtual

◆ Balance()

void SEGasCompartment::Balance ( BalanceGasBy e )

virtual

◆ Clear()

void SEGasCompartment::Clear ( )

overridevirtual

Reimplemented from SECompartment.

◆ CreateSubstanceQuantity()

SEGasSubstanceQuantity & SEGasCompartment::CreateSubstanceQuantity	(	SESubstance &	substance,
		bool	zeroOut = `true`
	)

protectedvirtual

◆ GetChildren()

virtual const std::vector< SEGasCompartment * > & SEGasCompartment::GetChildren ( )

inlinevirtual

◆ GetDiffusionSurfaceArea() [1/2]

SEScalarArea & SEGasCompartment::GetDiffusionSurfaceArea ( )

virtual

◆ GetDiffusionSurfaceArea() [2/2]

double SEGasCompartment::GetDiffusionSurfaceArea ( const AreaUnit & unit ) const

virtual

◆ GetLeaves()

virtual const std::vector< SEGasCompartment * > & SEGasCompartment::GetLeaves ( )

inlinevirtual

◆ GetScalar()

const SEScalar * SEGasCompartment::GetScalar ( const std::string & name )

overridevirtual

Implements SECompartment.

◆ GetVentilation() [1/2]

SEScalarVolumePerTime & SEGasCompartment::GetVentilation ( )

virtual

◆ GetVentilation() [2/2]

double SEGasCompartment::GetVentilation ( const VolumePerTimeUnit & unit ) const

virtual

◆ GetVentilationPerfusionRatio() [1/2]

SEScalar & SEGasCompartment::GetVentilationPerfusionRatio ( )

virtual

◆ GetVentilationPerfusionRatio() [2/2]

double SEGasCompartment::GetVentilationPerfusionRatio ( ) const

virtual

◆ HasDiffusionSurfaceArea()

bool SEGasCompartment::HasDiffusionSurfaceArea ( ) const

virtual

◆ HasVentilation()

bool SEGasCompartment::HasVentilation ( ) const

virtual

◆ HasVentilationPerfusionRatio()

bool SEGasCompartment::HasVentilationPerfusionRatio ( ) const

virtual

◆ StateChange()

void SEGasCompartment::StateChange ( )

overridevirtual

Implements SECompartment.

Friends And Related Function Documentation

◆ PBCompartment

friend class PBCompartment

friend

◆ SECompartmentManager

friend class SECompartmentManager

friend

Member Data Documentation

◆ m_Children

std::vector<SEGasCompartment*> SEGasCompartment::m_Children

protected

◆ m_DiffusionSurfaceArea

SEScalarArea* SEGasCompartment::m_DiffusionSurfaceArea

protected

◆ m_Leaves

std::vector<SEGasCompartment*> SEGasCompartment::m_Leaves

protected

◆ m_Ventilation

SEScalarVolumePerTime* SEGasCompartment::m_Ventilation

protected

◆ m_VentilationPerfusionRatio

SEScalar* SEGasCompartment::m_VentilationPerfusionRatio

protected

Public Member Functions

Protected Member Functions

Protected Attributes

Friends

Additional Inherited Members

Constructor & Destructor Documentation

◆ SEGasCompartment()

◆ ~SEGasCompartment()

Member Function Documentation

◆ AddChild()

◆ Balance()

◆ Clear()

◆ CreateSubstanceQuantity()

◆ GetChildren()

◆ GetDiffusionSurfaceArea() [1/2]

◆ GetDiffusionSurfaceArea() [2/2]

◆ GetLeaves()

◆ GetScalar()

◆ GetVentilation() [1/2]

◆ GetVentilation() [2/2]

◆ GetVentilationPerfusionRatio() [1/2]

◆ GetVentilationPerfusionRatio() [2/2]

◆ HasDiffusionSurfaceArea()

◆ HasVentilation()

◆ HasVentilationPerfusionRatio()

◆ StateChange()

Friends And Related Function Documentation

◆ PBCompartment

◆ SECompartmentManager

Member Data Documentation

◆ m_Children

◆ m_DiffusionSurfaceArea

◆ m_Leaves

◆ m_Ventilation

◆ m_VentilationPerfusionRatio