SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE > Class Template Reference

#include <SEFluidCompartment.h>

Inherits SECompartment, and VertexType.

Public Member Functions
virtual	~SEFluidCompartment ()
virtual void	Clear ()
virtual std::string	GetName () const
virtual const SEScalar *	GetScalar (const std::string &name)
virtual bool	HasChildren () const
virtual bool	HasNodeMapping () const
virtual SECompartmentNodes< FLUID_COMPARTMENT_NODE > &	GetNodeMapping ()
virtual void	MapNode (SEFluidCircuitNode &node)
virtual void	Sample (bool CycleStart)
virtual void	SampleFlow ()
virtual bool	HasInFlow () const
virtual const SEScalarVolumePerTime &	GetInFlow () const
virtual double	GetInFlow (const VolumePerTimeUnit &unit) const
virtual bool	HasAverageInFlow () const
virtual const SEScalarVolumePerTime &	GetAverageInFlow () const
virtual double	GetAverageInFlow (const VolumePerTimeUnit &unit) const
virtual bool	HasOutFlow () const
virtual const SEScalarVolumePerTime &	GetOutFlow () const
virtual double	GetOutFlow (const VolumePerTimeUnit &unit) const
virtual bool	HasAverageOutFlow () const
virtual const SEScalarVolumePerTime &	GetAverageOutFlow () const
virtual double	GetAverageOutFlow (const VolumePerTimeUnit &unit) const
virtual bool	HasPressure () const
virtual SEScalarPressure &	GetPressure ()
virtual double	GetPressure (const PressureUnit &unit) const
virtual bool	HasVolume () const
virtual SEScalarVolume &	GetVolume ()
virtual double	GetVolume (const VolumeUnit &unit) const
virtual bool	HasSubstanceQuantities () const
virtual bool	HasSubstanceQuantity (const SESubstance &substance) const
virtual SubstanceQuantityType *	GetSubstanceQuantity (const SESubstance &substance) const
virtual const std::vector< SubstanceQuantityType * > &	GetSubstanceQuantities () const
virtual void	ZeroSubstanceQuantities ()
virtual void	AddLink (LinkType &link)
virtual void	RemoveLink (LinkType &link)
virtual void	RemoveLinks ()
virtual const std::vector< LinkType * > &	GetLinks ()
virtual bool	HasChild (const SEFluidCompartment &cmpt)
Public Member Functions inherited from SECompartment
virtual	~SECompartment ()
virtual void	Clear ()
virtual std::string	GetName () const
virtual const SEScalar *	GetScalar (const std::string &name)=0
virtual bool	HasChildren () const =0
virtual void	StateChange ()=0
Public Member Functions inherited from Loggable
	Loggable (Logger *logger=nullptr)
	Loggable (std::string const &logfile)
virtual	~Loggable ()
virtual Logger *	GetLogger () const
virtual void	SetLogger (Logger &logger)
virtual void	Debug (std::string const &msg) const
virtual void	Debug (std::stringstream &msg) const
virtual void	Debug (std::ostream &msg) const
virtual void	Info (std::string const &msg) const
virtual void	Info (std::stringstream &msg) const
virtual void	Info (const std::stringstream &msg) const
virtual void	Info (std::ostream &msg) const
virtual void	Warning (std::string const &msg) const
virtual void	Warning (std::stringstream &msg) const
virtual void	Warning (std::ostream &msg) const
virtual void	Error (std::string const &msg) const
virtual void	Error (std::stringstream &msg) const
virtual void	Error (std::ostream &msg) const
virtual void	Fatal (std::string const &msg) const
virtual void	Fatal (std::stringstream &msg) const
virtual void	Fatal (std::ostream &msg) const

Protected Member Functions
	SEFluidCompartment (const std::string &name, Logger *logger)
virtual void	RemoveSubstanceQuantity (const SESubstance &substance)
virtual bool	HasQuantity () const
virtual SEScalarVolume &	GetQuantity ()
virtual double	CalculateInFlow_mL_Per_s () const
virtual double	CalculateOutFlow_mL_Per_s () const
virtual std::vector< TransportSubstanceType * > &	GetTransportSubstances ()
Protected Member Functions inherited from SECompartment
	SECompartment (const std::string &name, Logger *logger)

Protected Attributes
SEScalarVolumePerTime *	m_InFlow
SEScalarVolumePerTime *	m_OutFlow
bool	m_SampleFlow
SEScalarVolumePerTime *	m_AverageInFlow
SEScalarVolumePerTime *	m_AverageOutFlow
SERunningAverage *	m_AverageInFlow_mL_Per_s
SERunningAverage *	m_AverageOutFlow_mL_Per_s
SEScalarPressure *	m_Pressure
SEScalarVolume *	m_Volume
std::vector< SubstanceQuantityType * >	m_SubstanceQuantities
std::vector< TransportSubstanceType * >	m_TransportSubstances
std::vector< LinkType * >	m_Links
std::vector< LinkType * >	m_IncomingLinks
std::vector< LinkType * >	m_OutgoingLinks
std::vector< SEFluidCompartment * >	m_FluidChildren
SECompartmentNodes< FLUID_COMPARTMENT_NODE >	m_Nodes
Protected Attributes inherited from SECompartment
std::string	m_Name
Protected Attributes inherited from Loggable
bool	myLogger
Logger *	m_Logger

Friends
class	PBCompartment
template<typename CompartmentType , typename CompartmentLinkType >
class	SECompartmentGraph

Additional Inherited Members
Static Public Member Functions inherited from SECompartment
template<typename CompartmentType >
static void	FindLeaves (CompartmentType &cmpt, std::vector< CompartmentType * > &leaves)

Constructor & Destructor Documentation

SEFluidCompartment()

template<FLUID_COMPARTMENT_TEMPLATE >

SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::SEFluidCompartment ( const std::string &  name, Logger *  logger  )

protected

~SEFluidCompartment()

template<FLUID_COMPARTMENT_TEMPLATE >

SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::~SEFluidCompartment

virtual

Member Function Documentation

AddLink()

template<FLUID_COMPARTMENT_TEMPLATE >

void SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::AddLink ( LinkType &  link )

virtual

CalculateInFlow_mL_Per_s()

template<FLUID_COMPARTMENT_TEMPLATE >

double SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::CalculateInFlow_mL_Per_s

protectedvirtual

CalculateOutFlow_mL_Per_s()

template<FLUID_COMPARTMENT_TEMPLATE >

double SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::CalculateOutFlow_mL_Per_s

protectedvirtual

Clear()

template<FLUID_COMPARTMENT_TEMPLATE >

void SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::Clear

virtual

Reimplemented from SECompartment.

Reimplemented in SEGasCompartment, and SELiquidCompartment.

GetAverageInFlow() [1/2]

template<FLUID_COMPARTMENT_TEMPLATE >

const SEScalarVolumePerTime & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetAverageInFlow

virtual

GetAverageInFlow() [2/2]

template<FLUID_COMPARTMENT_TEMPLATE >

double SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetAverageInFlow ( const VolumePerTimeUnit &  unit ) const

virtual

GetAverageOutFlow() [1/2]

template<FLUID_COMPARTMENT_TEMPLATE >

const SEScalarVolumePerTime & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetAverageOutFlow

virtual

GetAverageOutFlow() [2/2]

template<FLUID_COMPARTMENT_TEMPLATE >

double SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetAverageOutFlow ( const VolumePerTimeUnit &  unit ) const

virtual

GetInFlow() [1/2]

template<FLUID_COMPARTMENT_TEMPLATE >

const SEScalarVolumePerTime & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetInFlow

virtual

GetInFlow() [2/2]

template<FLUID_COMPARTMENT_TEMPLATE >

double SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetInFlow ( const VolumePerTimeUnit &  unit ) const

virtual

GetLinks()

template<FLUID_COMPARTMENT_TEMPLATE >

const std::vector< LinkType * > & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetLinks

virtual

GetName()

template<FLUID_COMPARTMENT_TEMPLATE >

virtual std::string SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetName ( ) const

inlinevirtual

Reimplemented from SECompartment.

GetNodeMapping()

template<FLUID_COMPARTMENT_TEMPLATE >

virtual SECompartmentNodes< FLUID_COMPARTMENT_NODE > & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetNodeMapping ( )

inlinevirtual

GetOutFlow() [1/2]

template<FLUID_COMPARTMENT_TEMPLATE >

const SEScalarVolumePerTime & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetOutFlow

virtual

GetOutFlow() [2/2]

template<FLUID_COMPARTMENT_TEMPLATE >

double SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetOutFlow ( const VolumePerTimeUnit &  unit ) const

virtual

GetPressure() [1/2]

template<FLUID_COMPARTMENT_TEMPLATE >

SEScalarPressure & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetPressure

virtual

GetPressure() [2/2]

template<FLUID_COMPARTMENT_TEMPLATE >

double SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetPressure ( const PressureUnit &  unit ) const

virtual

GetQuantity()

template<FLUID_COMPARTMENT_TEMPLATE >

virtual SEScalarVolume & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetQuantity ( )

inlineprotectedvirtual

GetScalar()

template<FLUID_COMPARTMENT_TEMPLATE >

const SEScalar * SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetScalar ( const std::string &  name )

virtual

Implements SECompartment.

Reimplemented in SEGasCompartment, and SELiquidCompartment.

GetSubstanceQuantities()

template<FLUID_COMPARTMENT_TEMPLATE >

const std::vector< SubstanceQuantityType * > & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetSubstanceQuantities

virtual

GetSubstanceQuantity()

template<FLUID_COMPARTMENT_TEMPLATE >

SubstanceQuantityType * SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetSubstanceQuantity ( const SESubstance &  substance ) const

virtual

GetTransportSubstances()

template<FLUID_COMPARTMENT_TEMPLATE >

virtual std::vector< TransportSubstanceType * > & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetTransportSubstances ( )

inlineprotectedvirtual

GetVolume() [1/2]

template<FLUID_COMPARTMENT_TEMPLATE >

SEScalarVolume & SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetVolume

virtual

GetVolume() [2/2]

template<FLUID_COMPARTMENT_TEMPLATE >

double SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::GetVolume ( const VolumeUnit &  unit ) const

virtual

HasAverageInFlow()

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasAverageInFlow

virtual

HasAverageOutFlow()

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasAverageOutFlow

virtual

HasChild()

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasChild ( const SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE > &  cmpt )

virtual

HasChildren()

template<FLUID_COMPARTMENT_TEMPLATE >

virtual bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasChildren ( ) const

inlinevirtual

Implements SECompartment.

HasInFlow()

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasInFlow

virtual

HasNodeMapping()

template<FLUID_COMPARTMENT_TEMPLATE >

virtual bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasNodeMapping ( ) const

inlinevirtual

HasOutFlow()

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasOutFlow

virtual

HasPressure()

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasPressure

virtual

HasQuantity()

template<FLUID_COMPARTMENT_TEMPLATE >

virtual bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasQuantity ( ) const

inlineprotectedvirtual

HasSubstanceQuantities()

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasSubstanceQuantities

virtual

HasSubstanceQuantity()

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasSubstanceQuantity ( const SESubstance &  substance ) const

virtual

HasVolume()

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::HasVolume

virtual

MapNode()

template<FLUID_COMPARTMENT_TEMPLATE >

void SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::MapNode ( SEFluidCircuitNode &  node )

virtual

RemoveLink()

template<FLUID_COMPARTMENT_TEMPLATE >

void SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::RemoveLink ( LinkType &  link )

virtual

RemoveLinks()

template<FLUID_COMPARTMENT_TEMPLATE >

void SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::RemoveLinks

virtual

RemoveSubstanceQuantity()

template<FLUID_COMPARTMENT_TEMPLATE >

void SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::RemoveSubstanceQuantity ( const SESubstance &  substance )

protectedvirtual

Sample()

template<FLUID_COMPARTMENT_TEMPLATE >

void SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::Sample ( bool  CycleStart )

virtual

SampleFlow()

template<FLUID_COMPARTMENT_TEMPLATE >

void SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::SampleFlow

virtual

ZeroSubstanceQuantities()

template<FLUID_COMPARTMENT_TEMPLATE >

void SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::ZeroSubstanceQuantities

virtual

Friends And Related Function Documentation

PBCompartment

template<FLUID_COMPARTMENT_TEMPLATE >

friend class PBCompartment

friend

SECompartmentGraph

template<FLUID_COMPARTMENT_TEMPLATE >

template<typename CompartmentType , typename CompartmentLinkType >

friend class SECompartmentGraph

friend

Member Data Documentation

m_AverageInFlow

template<FLUID_COMPARTMENT_TEMPLATE >

SEScalarVolumePerTime* SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_AverageInFlow

mutableprotected

m_AverageInFlow_mL_Per_s

template<FLUID_COMPARTMENT_TEMPLATE >

SERunningAverage* SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_AverageInFlow_mL_Per_s

mutableprotected

m_AverageOutFlow

template<FLUID_COMPARTMENT_TEMPLATE >

SEScalarVolumePerTime* SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_AverageOutFlow

mutableprotected

m_AverageOutFlow_mL_Per_s

template<FLUID_COMPARTMENT_TEMPLATE >

SERunningAverage* SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_AverageOutFlow_mL_Per_s

mutableprotected

m_FluidChildren

template<FLUID_COMPARTMENT_TEMPLATE >

std::vector<SEFluidCompartment*> SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_FluidChildren

protected

m_IncomingLinks

template<FLUID_COMPARTMENT_TEMPLATE >

std::vector<LinkType*> SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_IncomingLinks

protected

m_InFlow

template<FLUID_COMPARTMENT_TEMPLATE >

SEScalarVolumePerTime* SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_InFlow

mutableprotected

m_Links

template<FLUID_COMPARTMENT_TEMPLATE >

std::vector<LinkType*> SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_Links

protected

m_Nodes

template<FLUID_COMPARTMENT_TEMPLATE >

SECompartmentNodes<FLUID_COMPARTMENT_NODE> SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_Nodes

protected

m_OutFlow

template<FLUID_COMPARTMENT_TEMPLATE >

SEScalarVolumePerTime* SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_OutFlow

mutableprotected

m_OutgoingLinks

template<FLUID_COMPARTMENT_TEMPLATE >

std::vector<LinkType*> SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_OutgoingLinks

protected

m_Pressure

template<FLUID_COMPARTMENT_TEMPLATE >

SEScalarPressure* SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_Pressure

protected

m_SampleFlow

template<FLUID_COMPARTMENT_TEMPLATE >

bool SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_SampleFlow

protected

m_SubstanceQuantities

template<FLUID_COMPARTMENT_TEMPLATE >

std::vector<SubstanceQuantityType*> SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_SubstanceQuantities

protected

m_TransportSubstances

template<FLUID_COMPARTMENT_TEMPLATE >

std::vector<TransportSubstanceType*> SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_TransportSubstances

protected

m_Volume

template<FLUID_COMPARTMENT_TEMPLATE >

SEScalarVolume* SEFluidCompartment< FLUID_COMPARTMENT_TEMPLATE >::m_Volume

protected