SEPatientConfiguration Class Reference

#include <SEPatientConfiguration.h>

Inherits Loggable.

Public Member Functions
	SEPatientConfiguration (Logger *logger=nullptr)
virtual	~SEPatientConfiguration ()
virtual void	Clear ()
bool	SerializeToString (std::string &output, SerializationFormat m) const
bool	SerializeToFile (const std::string &filename) const
bool	SerializeFromString (const std::string &src, SerializationFormat m, const SESubstanceManager &subMgr)
bool	SerializeFromFile (const std::string &filename, const SESubstanceManager &subMgr)
virtual bool	IsValid () const
virtual std::string	GetDataRoot () const
virtual void	SetDataRoot (const std::string &rootDir)
virtual std::string	GetPatientFile () const
virtual void	SetPatientFile (const std::string &patientFile)
virtual bool	HasPatientFile () const
virtual void	InvalidatePatientFile ()
virtual SEPatient &	GetPatient ()
virtual const SEPatient *	GetPatient () const
virtual bool	HasPatient () const
virtual void	InvalidatePatient ()
virtual SEConditionManager &	GetConditions ()
virtual const SEConditionManager *	GetConditions () const
virtual bool	HasConditions () const
virtual void	InvalidateConditions ()
virtual bool	HasOverride () const
virtual void	AddScalarOverride (const std::string &name, double value)
virtual void	AddScalarOverride (const std::string &name, double value, std::string unit)
virtual void	AddScalarOverride (const std::string &name, double value, const CCompoundUnit &unit)
virtual std::vector< SEScalarProperty > &	GetScalarOverrides ()
virtual const std::vector< SEScalarProperty > &	GetScalarOverrides () const
virtual void	RemoveOverrides ()
Public Member Functions inherited from Loggable
	Loggable (Logger *logger=nullptr)
	Loggable (std::string const &logfile)
virtual	~Loggable ()
virtual Logger *	GetLogger () const
virtual void	SetLogger (Logger &logger)
virtual void	Debug (std::string const &msg, std::string const &origin=empty) const
virtual void	Debug (std::stringstream &msg, std::string const &origin=empty) const
virtual void	Debug (std::ostream &msg, std::string const &origin=empty) const
virtual void	Info (std::string const &msg, std::string const &origin=empty) const
virtual void	Info (std::stringstream &msg, std::string const &origin=empty) const
virtual void	Info (const std::stringstream &msg, std::string const &origin=empty) const
virtual void	Info (std::ostream &msg, std::string const &origin=empty) const
virtual void	Warning (std::string const &msg, std::string const &origin=empty) const
virtual void	Warning (std::stringstream &msg, std::string const &origin=empty) const
virtual void	Warning (std::ostream &msg, std::string const &origin=empty) const
virtual void	Error (std::string const &msg, std::string const &origin=empty) const
virtual void	Error (std::stringstream &msg, std::string const &origin=empty) const
virtual void	Error (std::ostream &msg, std::string const &origin=empty) const
virtual void	Fatal (std::string const &msg, std::string const &origin=empty) const
virtual void	Fatal (std::stringstream &msg, std::string const &origin=empty) const
virtual void	Fatal (std::ostream &msg, std::string const &origin=empty) const
std::string	to_string (int i)
std::string	to_string (unsigned int i)
std::string	to_string (size_t t)
std::string	to_string (float f)
std::string	to_string (double d)

Protected Attributes
std::string	m_DataRoot
SEPatient *	m_Patient
std::string	m_PatientFile
SEConditionManager *	m_Conditions
std::vector< SEScalarProperty >	m_ScalarOverrides
Protected Attributes inherited from Loggable
bool	myLogger
Logger *	m_Logger

Friends
class	PBEngine

Additional Inherited Members
Static Public Attributes inherited from Loggable
static const std::string	empty

Constructor & Destructor Documentation

SEPatientConfiguration()

SEPatientConfiguration::SEPatientConfiguration

(

Logger *

logger = nullptr

)

~SEPatientConfiguration()

SEPatientConfiguration::~SEPatientConfiguration ( )

virtual

Member Function Documentation

AddScalarOverride() [1/3]

void SEPatientConfiguration::AddScalarOverride ( const std::string &  name, double  value  )

virtual

AddScalarOverride() [2/3]

void SEPatientConfiguration::AddScalarOverride ( const std::string &  name, double  value, std::string  unit  )

virtual

AddScalarOverride() [3/3]

void SEPatientConfiguration::AddScalarOverride ( const std::string &  name, double  value, const CCompoundUnit &  unit  )

virtual

Clear()

void SEPatientConfiguration::Clear ( )

virtual

GetConditions() [1/2]

SEConditionManager & SEPatientConfiguration::GetConditions ( )

virtual

GetConditions() [2/2]

const SEConditionManager * SEPatientConfiguration::GetConditions ( ) const

virtual

GetDataRoot()

std::string SEPatientConfiguration::GetDataRoot ( ) const

virtual

GetPatient() [1/2]

SEPatient & SEPatientConfiguration::GetPatient ( )

virtual

GetPatient() [2/2]

const SEPatient * SEPatientConfiguration::GetPatient ( ) const

virtual

GetPatientFile()

std::string SEPatientConfiguration::GetPatientFile ( ) const

virtual

GetScalarOverrides() [1/2]

std::vector< SEScalarProperty > & SEPatientConfiguration::GetScalarOverrides ( )

virtual

GetScalarOverrides() [2/2]

const std::vector< SEScalarProperty > & SEPatientConfiguration::GetScalarOverrides ( ) const

virtual

HasConditions()

bool SEPatientConfiguration::HasConditions ( ) const

virtual

HasOverride()

bool SEPatientConfiguration::HasOverride ( ) const

virtual

HasPatient()

bool SEPatientConfiguration::HasPatient ( ) const

virtual

HasPatientFile()

bool SEPatientConfiguration::HasPatientFile ( ) const

virtual

InvalidateConditions()

void SEPatientConfiguration::InvalidateConditions ( )

virtual

InvalidatePatient()

void SEPatientConfiguration::InvalidatePatient ( )

virtual

InvalidatePatientFile()

void SEPatientConfiguration::InvalidatePatientFile ( )

virtual

IsValid()

bool SEPatientConfiguration::IsValid ( ) const

virtual

RemoveOverrides()

void SEPatientConfiguration::RemoveOverrides ( )

virtual

SerializeFromFile()

bool SEPatientConfiguration::SerializeFromFile	(	const std::string &	filename,
		const SESubstanceManager &	subMgr
	)

SerializeFromString()

bool SEPatientConfiguration::SerializeFromString	(	const std::string &	src,
		SerializationFormat	m,
		const SESubstanceManager &	subMgr
	)

SerializeToFile()

bool SEPatientConfiguration::SerializeToFile

(

const std::string &

filename

)

const

SerializeToString()

bool SEPatientConfiguration::SerializeToString	(	std::string &	output,
		SerializationFormat	m
	)		const

SetDataRoot()

void SEPatientConfiguration::SetDataRoot ( const std::string &  rootDir )

virtual

SetPatientFile()

void SEPatientConfiguration::SetPatientFile ( const std::string &  patientFile )

virtual

Friends And Related Function Documentation

PBEngine

friend class PBEngine

friend

Member Data Documentation

m_Conditions

SEConditionManager* SEPatientConfiguration::m_Conditions

protected

m_DataRoot

std::string SEPatientConfiguration::m_DataRoot

protected

m_Patient

SEPatient* SEPatientConfiguration::m_Patient

protected

m_PatientFile

std::string SEPatientConfiguration::m_PatientFile

protected

m_ScalarOverrides

std::vector<SEScalarProperty> SEPatientConfiguration::m_ScalarOverrides

protected