EngineTest.h
1 /* Distributed under the Apache License, Version 2.0.
2  See accompanying NOTICE file for details.*/
3 
4 #include "cdm/utils/testing/SETestManager.h"
5 #include "engine/human_adult/whole_body/Engine.h"
6 #include "engine/human_adult/whole_body/controller/Controller.h"
7 
8 class SESubstance;
9 class SETestSuite;
10 class HowToTracker;
11 
12 namespace pulse { namespace human_adult_whole_body
13 {
14  class EngineTest : public SETestManager
15  {
16  public:
17  EngineTest(Logger* logger = nullptr);
18  virtual ~EngineTest();
19 
20  virtual bool RunTest(const std::string& testName, const std::string& sOutputDirectory) override;
21 
22  protected:
23  virtual void FillFunctionMap() override;
24  typedef void(EngineTest::* testFunction)(const std::string&);
25  std::map<std::string, testFunction> testMap;
26  std::stringstream m_ss;
27 
28 
30  // Circuit Hemodynamics and Compartment Transport Tests //
31  // System Specific Functions Tests as well //
33  public:
35  // Cardiovascular //
37  void CardiovascularCircuitAndTransportTest(const std::string& sTestDirectory);
38  void CardiovascularAndRenalCircuitAndTransportTest(const std::string& sTestDirectory);
39  void CardiovascularAndTissueCircuitAndTransportTest(const std::string& sTestDirectory);
40  void CardiovascularAndCerebrospinalFluidCircuitAndTransportTest(const std::string& sTestDirectory);
41  void FullCardiovascularCircuitAndTransportTest(const std::string& sTestDirectory);
42  void CardiovascularBloodGasesTest(const std::string& sTestDirectory);// Characterize the cv circuit
43  void TuneCardiovascularCircuitTest(const std::string& sTestDirectory);
44  // Cardiovascular Utilities //
45  void CardiovascularCircuitScaleTests(const std::string& sTestDirectory);
46  protected:
47  enum CardiovascularDriver { Sinusoid = 0, Heart };
48  void SinusoidHeartDriver(double time_s, double heartRate_s, double& lHeartElastance, double& rHeartElastance);
49  void CardiovascularCircuitAndTransportTest(CardiovascularDriver driverType, double complianceScale, double resistanceScale, double volumeScale, double heartRate_bpm,
50  double sysRes, double sysComp, double aortaRes, double aortaComp, double rightHeartRes, double venaCavaComp, bool connectTissue, bool connectRenal, bool connectCSF,
51  bool balanceBloodgases, const std::string& sTestDirectory, const std::string& sTestName, bool breakOutResults);
52  void TuneCardiovascularCircuitTest(SETestSuite& testSuite, const std::string& sTestDirectory, const std::string& sTestName, SEPatient& patient);
53 
54  double m_MeanAortaPressure;
55  double m_MeanCVPressure;
56  double m_Systolic;
57  double m_Diastolic;
58  double m_Pulse;
59  double m_CardiacOutput;
60 
61  public:
63  // Renal //
65  void RenalCircuitAndTransportTest(const std::string& sTestDirectory);
66  void RenalTGFFeedbackTest(const std::string& sTestDirectory);
67  void RenalTGFandUPRFeedbackTest(const std::string& sTestDirectory);
68  void RenalSecretionTest(const std::string& sTestDirectory);
69  void RenalUrinateTest(const std::string& sTestDirectory);
70  protected:
71  enum RenalFeedback { TGF, TGFandUPR };
72  void RenalFeedbackTest(RenalFeedback feedback, const std::string& sTestDirectory, const std::string& sTestName);
73  enum RenalSystems { Secretion, Urinating};
74  void RenalSystemTest(RenalSystems systemtest, const std::string& sTestDirectory, const std::string& sTestName);
75 
76  public:
78  // Respiratory //
80  void RespiratoryCircuitAndTransportTest(const std::string& sTestDirectory);
81  void RespiratoryDriverTest(const std::string& sTestDirectory);
82  protected:
83  enum RespiratoryConfiguration { RespiratorySolo, AnesthesiaMachineSolo, RespiratoryWithAnesthesiaMachine, RespiratoryWithInhaler, RespiratoryWithMechanicalVentilation, MechanicalVentilatorSolo, RespiratoryWithMechanicalVentilator
84  };
85  void RespiratoryCircuitAndTransportTest(RespiratoryConfiguration config, const std::string& sTestDirectory);
86 
87  public:
89  // Anesthesia Machine //
91  void AnesthesiaMachineCircuitAndTransportTest(const std::string& sTestDirectory);
92  void RespiratoryWithAnesthesiaMachineCircuitAndTransportTest(const std::string& sTestDirectory);
93  protected:
94  void AnesthesiaMachineCircuitAndTransportTest(RespiratoryConfiguration config, const std::string& sTestDirectory);
95 
96  public:
98  // Mechanical Ventilator //
100  void MechanicalVentilatorCircuitAndTransportTest(const std::string& sTestDirectory);
101  void RespiratoryWithMechanicalVentilatorCircuitAndTransportTest(const std::string& sTestDirectory);
102  protected:
103  void MechanicalVentilatorCircuitAndTransportTest(RespiratoryConfiguration config, const std::string& sTestDirectory);
104 
105  public:
107  // Inhaler //
109  void RespiratoryWithInhalerCircuitAndTransportTest(const std::string& sTestDirectory);
110  protected:
111 
112  public:
114  // Mechanical Ventilation //
116  void RespiratoryWithMechanicalVentilationCircuitAndTransportTest(const std::string& sTestDirectory);
117  protected:
118 
119  public:
121  // Environment and Energy //
122  void InternalTemperatureVariableBMRCircuitTest(const std::string& sTestDirectory);
123  void InternalTemperatureVariableSkinCircuitTest(const std::string& sTestDirectory);
124  void InternalTemperatureVariableCoreCircuitTest(const std::string& sTestDirectory);
125  void EnvironmentVariableTemperatureCircuitTest(const std::string& sTestDirectory);
126  void CombinedInternalAndEnvironmentVariableBMRandTemperatureCircuitTest(const std::string& sTestDirectory);
127  void CombinedInternalAndEnvironmentSkinTempDropCircuitTest(const std::string& sTestDirectory);
128  void EnvironmentISO7730ComparisonTest(const std::string& sTestDirectory);
129  protected:
130 
131  public:
133  // Tissue Tests //
135  void DiffusionClearanceExcretionTests(const std::string& rptDirectory);
136  void AlveolarCarbonDioxideDiffusionTest(const std::string& rptDirectory);
137  void AlveolarOxygenDiffusionTest(const std::string& rptDirectory);
138  void InstantPlusSimpleDiffusionTest(const std::string& rptDirectory);
139  void SimpleDiffusionTwoCompartmentTest(const std::string& rptDirectory);
140  void SimpleDiffusionFourCompartmentTest(const std::string& rptDirectory);
141  void SimpleDiffusionHierarchyTest(const std::string& rptDirectory);
142  void FacilitatedDiffusionTest(const std::string& rptDirectory);
143  protected:
144  void DistributeMass(SETestSuite& testSuite);
145  void PerfusionLimitedDiffusionTest(SETestSuite& testSuite);
146  void InstantDiffusionTest(SETestSuite& testSuite);
147  void ActiveTransportTest(SETestSuite& testSuite);
148  void GenericClearanceTest(SETestSuite& testSuite);
149  void GenericExcretionTest(SETestSuite& testSuite);
150 
151  public:
153  // Nervous Tests //
155  void BrainInjuryTest(const std::string& rptDirectory);
156  protected:
157 
158  public:
160  // Acid Base Engine Tests //
162  void FourCompartmentTestSimple(const std::string& sOutputDirectory);
163  void AcidBaseFourCompartmentTest(const std::string& sOutputDirectory);
164  void FiveCompartmentTestWithDiffusion(const std::string& sOutputDirectory);
165  void AcidBaseFourCompartmentTestWithProductionConsumption(const std::string& sOutputDirectory);
166  void AcidBaseFiveCompartmentTestWithDiffusion(const std::string& sOutputDirectory);
167  void AcidBaseFiveCompartmentTestWithProductionConsumptionAndDiffusion(const std::string& sOutputDirectory);
168  protected:
169  void FourCompartmentTest(bool usingAcidBase, bool usingProductionConsumption, bool usingDiffusion, const std::string& sOutputDirectory);
170  bool usingAcidBase;
171  bool usingProductionConsumption;
172  bool usingDiffusion;
173 
174  public:
176  // Acid Base Tests //
178  void AcidBaseMathTest(const std::string& sOutputDirectory);
179  void AcidBaseFeedbackTest(const std::string& sOutputDirectory);
180  void AcidBaseLimitsTest(const std::string& sOutputDirectory);
181  void AcidBaseExtremeTest(const std::string & rptDirectory);
182  void AcidBaseBloodGasTests(const std::string& sOutputDirectory);
183  protected:
184  enum bloodType { ARTERIAL, VENOUS, CAPILLARY, RESPIRATORY_ACIDOSIS, METABOLIC_ALKALOSIS, METABOLIC_ACIDOSIS, RESPIRATORY_ALKALOSIS, CUSTOM };
185  void AcidBaseBloodGasTest(Controller& bg, bloodType compartment, SETestSuite& testSuite);
186 
187  public:
189  // Aerosol Tests //
191  void AerosolTest(const std::string& sOutputDirectory);
192  protected:
193  void SizeIndependentDepositionEfficencyCoefficientsTest(SETestSuite& suite, SESubstance& substance, double expectedMouthCoeff, double expectedCarinaCoeff, double expectedDeadSpaceCoeff, double expectedAlveoliCoeff);
194  void DepositionFractionTest(SETestSuite& suite, SESubstance& substance, double expectedMouthDepFrac, double expectedCarinaDepFrac,
195  double expectedLeftDeadSpaceDepFrac, double expectedLeftAlveoliDepFrac, double expectedRightDeadSpaceDepFrac, double expectedRightAlveoliDepFrac);
196 
197  public:
199  // General Engine Tests //
201  void ReadScenarios(const std::string& sOutputDirectory);
202  void ReuseEngine(const std::string& sOutputDirectory);
203  void SerializationTest(const std::string& sTestDirectory);
204  void SetupPatientTest(const std::string& sTestDirectory);
205 
206  void ConditionCombinations(const std::string& rptDirectory);
207  void SolverSpeedTest(const std::string& sTestDirectory);
208 
209  protected:
210  void InhalerState(PhysiologyEngine* bg, HowToTracker& tracker);
211  void InjectSuccsState(PhysiologyEngine* bg, HowToTracker& tracker, const SESubstance& succs);
212 
213  void SetupPatient(SETestSuite& testSuite, const std::string& sTestDirectory, const std::string& sTestName, SEPatient* patient, SEPatient* expectedPatient, bool expectedPass);
214  bool CheckSetupPatient(SEPatient& setupPatient, SEPatient& expectedPatient, std::vector<std::string>& errs);
215  public:
217  // Black Box Tests //
219  void EmptyBlackBoxTest(const std::string& sOutputDirectory);
220  void ImposeFlowBlackBoxTest(const std::string& sOutputDirectory);
221  void ImposePressureAndFlowBlackBoxTest(const std::string& sOutputDirectory);
222  protected:
223 
224  };
225 END_NAMESPACE_EX
HowToTracker
Definition: SerializationTest.cpp:46
Logger
Definition: Logger.h:71
PhysiologyEngine
Definition: PhysiologyEngine.h:68
SEPatient
Definition: SEPatient.h:13
SESubstance
Definition: SESubstance.h:15
SETestManager
Definition: SETestManager.h:10
SETestSuite
Definition: SETestSuite.h:10
pulse
Definition: Logger.h:14

Distributed under the Apache License, Version 2.0.

See accompanying NOTICE file for details.