SELiquidCompartment Member List

This is the complete list of members for SELiquidCompartment, including all inherited members.

AddChild(SELiquidCompartment &child)SELiquidCompartmentvirtual
AddLink(LinkType &link)SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
Balance(BalanceLiquidBy e)SELiquidCompartmentvirtual
CalculateInFlow_mL_Per_s() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protectedvirtual
CalculateOutFlow_mL_Per_s() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protectedvirtual
Clear() overrideSELiquidCompartmentvirtual
CreateSubstanceQuantity(SESubstance &substance, bool zeroOut=true)SELiquidCompartmentprotectedvirtual
Debug(std::string const &msg) constLoggablevirtual
Debug(std::stringstream &msg) constLoggablevirtual
Debug(std::ostream &msg) constLoggablevirtual
Error(std::string const &msg) constLoggablevirtual
Error(std::stringstream &msg) constLoggablevirtual
Error(std::ostream &msg) constLoggablevirtual
Fatal(std::string const &msg) constLoggablevirtual
Fatal(std::stringstream &msg) constLoggablevirtual
Fatal(std::ostream &msg) constLoggablevirtual
FindLeaves(CompartmentType &cmpt, std::vector< CompartmentType * > &leaves)SECompartmentinlinestatic
GetAverageInFlow() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetAverageInFlow(const VolumePerTimeUnit &unit) constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetAverageOutFlow() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetAverageOutFlow(const VolumePerTimeUnit &unit) constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetChildren()SELiquidCompartmentinlinevirtual
GetInFlow() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetInFlow(const VolumePerTimeUnit &unit) constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetLeaves()SELiquidCompartmentinlinevirtual
GetLinks()SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetLogger() constLoggablevirtual
GetName() const overrideSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >inlinevirtual
GetNodeMapping()SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >inlinevirtual
GetOutFlow() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetOutFlow(const VolumePerTimeUnit &unit) constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetPerfusion()SELiquidCompartmentvirtual
GetPerfusion(const VolumePerTimeUnit &unit) constSELiquidCompartmentvirtual
GetPH()SELiquidCompartmentvirtual
GetPH() constSELiquidCompartmentvirtual
GetPressure()SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetPressure(const PressureUnit &unit) constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetQuantity() overrideSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >inlineprotected
GetScalar(const std::string &name) overrideSELiquidCompartmentvirtual
GetSubstanceQuantities() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetSubstanceQuantity(const SESubstance &substance) constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetTransportSubstances() overrideSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >inlineprotected
GetVolume()SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetVolume(const VolumeUnit &unit) constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
GetWaterVolumeFraction()SELiquidCompartmentvirtual
GetWaterVolumeFraction() constSELiquidCompartmentvirtual
HasAverageInFlow() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
HasAverageOutFlow() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
HasChild(const SEFluidCompartment &cmpt)SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
HasChildren() const overrideSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >inlinevirtual
HasInFlow() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
HasNodeMapping() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >inlinevirtual
HasOutFlow() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
HasPerfusion() constSELiquidCompartmentvirtual
HasPH() constSELiquidCompartmentvirtual
HasPressure() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
HasQuantity() const overrideSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >inlineprotected
HasSubstanceQuantities() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
HasSubstanceQuantity(const SESubstance &substance) constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
HasVolume() constSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
HasWaterVolumeFraction() constSELiquidCompartmentvirtual
Info(std::string const &msg) constLoggablevirtual
Info(std::stringstream &msg) constLoggablevirtual
Info(const std::stringstream &msg) constLoggablevirtual
Info(std::ostream &msg) constLoggablevirtual
Loggable(Logger *logger=nullptr)Loggable
Loggable(std::string const &logfile)Loggable
m_AverageInFlowSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >mutableprotected
m_AverageInFlow_mL_Per_sSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >mutableprotected
m_AverageOutFlowSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >mutableprotected
m_AverageOutFlow_mL_Per_sSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >mutableprotected
m_ChildrenSELiquidCompartmentprotected
m_FluidChildrenSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_IncomingLinksSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_InFlowSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >mutableprotected
m_LeavesSELiquidCompartmentprotected
m_LinksSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_LoggerLoggableprotected
m_NameSECompartmentprotected
m_NodesSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_OutFlowSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >mutableprotected
m_OutgoingLinksSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_PerfusionSELiquidCompartmentprotected
m_pHSELiquidCompartmentprotected
m_PressureSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_SampleFlowSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_SubstanceQuantitiesSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_TransportSubstancesSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_VolumeSEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
m_WaterVolumeFractionSELiquidCompartmentprotected
MapNode(SEFluidCircuitNode &node)SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
myLoggerLoggableprotected
PBCompartmentSELiquidCompartmentfriend
RemoveLink(LinkType &link)SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
RemoveLinks()SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
RemoveSubstanceQuantity(const SESubstance &substance)SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protectedvirtual
Sample(bool CycleStart)SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
SampleFlow()SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
SECompartment(const std::string &name, Logger *logger)SECompartmentprotected
SECompartmentManagerSELiquidCompartmentfriend
SEFluidCompartment(const std::string &name, Logger *logger)SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >protected
SELiquidCompartment(const std::string &name, Logger *logger)SELiquidCompartmentprotected
SELiquidSubstanceQuantitySELiquidCompartmentfriend
SETissueCompartmentSELiquidCompartmentfriend
SetLogger(Logger &logger)Loggablevirtual
StateChange() overrideSELiquidCompartmentvirtual
Warning(std::string const &msg) constLoggablevirtual
Warning(std::stringstream &msg) constLoggablevirtual
Warning(std::ostream &msg) constLoggablevirtual
ZeroSubstanceQuantities()SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
~Loggable()Loggablevirtual
~SECompartment()SECompartmentvirtual
~SEFluidCompartment()SEFluidCompartment< SELiquidCompartmentLink, SELiquidTransportVertex, SELiquidTransportSubstance, SELiquidSubstanceQuantity >virtual
~SELiquidCompartment()SELiquidCompartmentvirtual

Distributed under the Apache License, Version 2.0.

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